miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 119349 0.66 0.999855
Target:  5'- uGCUCCGGgccuucuccgccCGCGG-GAUg---GUGGACg -3'
miRNA:   3'- -CGGGGCU------------GCGCCuCUAaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 207765 0.66 0.999855
Target:  5'- aGCCgCCGcCGUGGuGGUUgcg--GGACg -3'
miRNA:   3'- -CGG-GGCuGCGCCuCUAAauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 4147 0.66 0.999855
Target:  5'- aCCgCCGACGCGaGGAUcgu--UGGACg -3'
miRNA:   3'- cGG-GGCUGCGCcUCUAaauauAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 166788 0.66 0.999855
Target:  5'- cGUCCCgGACGaggacguucUGGAGGUggugGUGGGCg -3'
miRNA:   3'- -CGGGG-CUGC---------GCCUCUAaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 70842 0.66 0.999855
Target:  5'- cGCCCCGGgacgagaugcCGCGGAGAagucgUcgGUccgcccggcgcGGACg -3'
miRNA:   3'- -CGGGGCU----------GCGCCUCUaa---AuaUA-----------UCUG- -5'
9143 5' -49.2 NC_002512.2 + 5549 0.66 0.999855
Target:  5'- aCCCCGGCGCGGcgccgcGGAaaaac--AGACg -3'
miRNA:   3'- cGGGGCUGCGCC------UCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 114980 0.66 0.999847
Target:  5'- --gCCGACGCgauGGAGAgggggcugGUGGACa -3'
miRNA:   3'- cggGGCUGCG---CCUCUaaaua---UAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 43082 0.66 0.999839
Target:  5'- gGUCCCGggGCGCGGcGAgcagcggGGACg -3'
miRNA:   3'- -CGGGGC--UGCGCCuCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 98863 0.66 0.999818
Target:  5'- gGCCCCGACGCccucGAGcgcgucgaAGACg -3'
miRNA:   3'- -CGGGGCUGCGc---CUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 130510 0.66 0.9998
Target:  5'- aCCCCGACgcugGCGGAGAgcucggGUcgcgggaacaugccGGACa -3'
miRNA:   3'- cGGGGCUG----CGCCUCUaaaua-UA--------------UCUG- -5'
9143 5' -49.2 NC_002512.2 + 81970 0.66 0.999795
Target:  5'- aGCCCCGG-GCGGGuGGUggcggcggGGGCg -3'
miRNA:   3'- -CGGGGCUgCGCCU-CUAaauaua--UCUG- -5'
9143 5' -49.2 NC_002512.2 + 52884 0.66 0.999764
Target:  5'- gGCCCUGACGCcacGAagUAcAUGGACg -3'
miRNA:   3'- -CGGGGCUGCGccuCUaaAUaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 149542 0.66 0.999764
Target:  5'- cGUCCagaGACuggaGUGGAGGcccuuugUUAUAUAGACa -3'
miRNA:   3'- -CGGGg--CUG----CGCCUCUa------AAUAUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 196214 0.66 0.99974
Target:  5'- aGCCuCCGGCGCGuGAGccucug--AGACc -3'
miRNA:   3'- -CGG-GGCUGCGC-CUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 21233 0.66 0.999701
Target:  5'- -gCCCGGgGCGGAGAcgg----GGGCg -3'
miRNA:   3'- cgGGGCUgCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 10773 0.66 0.999701
Target:  5'- gGCCCCGcCGCGGuaGGcgUaGUAgcGGCc -3'
miRNA:   3'- -CGGGGCuGCGCC--UCuaAaUAUauCUG- -5'
9143 5' -49.2 NC_002512.2 + 37169 0.66 0.999701
Target:  5'- gGCCacgaCGGCgGCGGAGAagUAga-AGACg -3'
miRNA:   3'- -CGGg---GCUG-CGCCUCUaaAUauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 148474 0.66 0.999695
Target:  5'- aGCCgCGACgGCGGGGA-------GGACg -3'
miRNA:   3'- -CGGgGCUG-CGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 216329 0.66 0.999634
Target:  5'- gGCCCCGACGCGGucggc------GGCu -3'
miRNA:   3'- -CGGGGCUGCGCCucuaaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 56365 0.66 0.999626
Target:  5'- gGCCCCGACggacggaucgGCGGAcggcggggcGAg--GUcgAGACa -3'
miRNA:   3'- -CGGGGCUG----------CGCCU---------CUaaaUAuaUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.