miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9150 3' -53.8 NC_002512.2 + 181404 0.65 0.992629
Target:  5'- gGCCUccGCCGGGGACGcguucaggauggccGUCagcuGCgGGAUCa -3'
miRNA:   3'- -CGGA--UGGCCUUUGC--------------UAGg---CG-CCUAGc -5'
9150 3' -53.8 NC_002512.2 + 6326 0.65 0.992726
Target:  5'- cGCCgcccgcggggggACCGGGcgcggggccGGCGggCCGCGGGcgCGu -3'
miRNA:   3'- -CGGa-----------UGGCCU---------UUGCuaGGCGCCUa-GC- -5'
9150 3' -53.8 NC_002512.2 + 11241 0.65 0.992629
Target:  5'- cGCCUccguccGCCGGGcgcgacagggucccGACGcgcguccuucgaGUCCGCGGG-CGa -3'
miRNA:   3'- -CGGA------UGGCCU--------------UUGC------------UAGGCGCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 120833 0.65 0.992629
Target:  5'- aCCUGCUGGGcgacgcguAcuuccuccccucgaACGcgCCGCGGGUCc -3'
miRNA:   3'- cGGAUGGCCU--------U--------------UGCuaGGCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 47316 0.66 0.986758
Target:  5'- -gCUGCUGGAGGaGAUguaCCGCGGcgCGu -3'
miRNA:   3'- cgGAUGGCCUUUgCUA---GGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 7025 0.66 0.991918
Target:  5'- gGCCuUGCCGGGcucgucguucggGACGAagcggcaguUCCGuCGGAagUCGc -3'
miRNA:   3'- -CGG-AUGGCCU------------UUGCU---------AGGC-GCCU--AGC- -5'
9150 3' -53.8 NC_002512.2 + 153250 0.66 0.989586
Target:  5'- aGCgaGCCgGGAGACGAUC-GaCGGAUgCGa -3'
miRNA:   3'- -CGgaUGG-CCUUUGCUAGgC-GCCUA-GC- -5'
9150 3' -53.8 NC_002512.2 + 121827 0.66 0.989457
Target:  5'- cGCCgucgGCCGGAcgggggggaggacGGCGGggaggacggCgGCGGAUCc -3'
miRNA:   3'- -CGGa---UGGCCU-------------UUGCUa--------GgCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 179877 0.66 0.99081
Target:  5'- aGCCUAuuuggguccCUGGuuAUGAUCCGgacaUGGAUCa -3'
miRNA:   3'- -CGGAU---------GGCCuuUGCUAGGC----GCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 80853 0.66 0.99081
Target:  5'- aGCCUcgggACgCGGGgcucggugucgGGCGGUCCGCGG--CGg -3'
miRNA:   3'- -CGGA----UG-GCCU-----------UUGCUAGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 128047 0.66 0.986758
Target:  5'- uGCCU-CUGGcggaGAUCCGgaGGAUCGu -3'
miRNA:   3'- -CGGAuGGCCuuugCUAGGCg-CCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 135001 0.66 0.989457
Target:  5'- cGCCUACCcguucguccuggaGGAuuCGggCCGgCGGA-CGg -3'
miRNA:   3'- -CGGAUGG-------------CCUuuGCuaGGC-GCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 97358 0.66 0.991918
Target:  5'- cGCCgcCCGcGGAGCGGggaCCGCGGcggcCGg -3'
miRNA:   3'- -CGGauGGC-CUUUGCUa--GGCGCCua--GC- -5'
9150 3' -53.8 NC_002512.2 + 74553 0.66 0.99081
Target:  5'- gGCCgcgGCgaCGGGAGCGAggUUgGCGaGAUCGu -3'
miRNA:   3'- -CGGa--UG--GCCUUUGCU--AGgCGC-CUAGC- -5'
9150 3' -53.8 NC_002512.2 + 7306 0.66 0.991812
Target:  5'- gGCCUccuCCGcGAcGGCGggCCGCGGcgggacgGUCGg -3'
miRNA:   3'- -CGGAu--GGC-CU-UUGCuaGGCGCC-------UAGC- -5'
9150 3' -53.8 NC_002512.2 + 88166 0.66 0.99081
Target:  5'- cGUCgcCCGG-GACGGUCgCGUccgGGAUCGa -3'
miRNA:   3'- -CGGauGGCCuUUGCUAG-GCG---CCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 24902 0.66 0.99081
Target:  5'- cGCCUuCCGGucccCGucgcCCGCGGcGUCGg -3'
miRNA:   3'- -CGGAuGGCCuuu-GCua--GGCGCC-UAGC- -5'
9150 3' -53.8 NC_002512.2 + 8408 0.66 0.99081
Target:  5'- cGCCgagcGCCaGGAACGcgcaCCGCGGccgGUCGg -3'
miRNA:   3'- -CGGa---UGGcCUUUGCua--GGCGCC---UAGC- -5'
9150 3' -53.8 NC_002512.2 + 7447 0.66 0.988238
Target:  5'- gGCCgcggcCCGGggGaag-CCGCGGcgCGg -3'
miRNA:   3'- -CGGau---GGCCuuUgcuaGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 8928 0.66 0.99081
Target:  5'- gGCCUcgGCCGGGucGGCGAugaagagcgcguUCCGaCGGuagCGg -3'
miRNA:   3'- -CGGA--UGGCCU--UUGCU------------AGGC-GCCua-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.