miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9150 3' -53.8 NC_002512.2 + 1305 0.69 0.944028
Target:  5'- cGCCUGCCGccGAcACGA-CCGCGGuaaGg -3'
miRNA:   3'- -CGGAUGGC--CUuUGCUaGGCGCCuagC- -5'
9150 3' -53.8 NC_002512.2 + 2087 0.72 0.868493
Target:  5'- cGCCgGgCGGGAGCGGgcgguacggCCGCGGcUCGg -3'
miRNA:   3'- -CGGaUgGCCUUUGCUa--------GGCGCCuAGC- -5'
9150 3' -53.8 NC_002512.2 + 3228 0.71 0.882509
Target:  5'- aGUCUGgacccggcgcgUCGGGugacGACGGUCCGCGGGcUCGg -3'
miRNA:   3'- -CGGAU-----------GGCCU----UUGCUAGGCGCCU-AGC- -5'
9150 3' -53.8 NC_002512.2 + 4202 0.69 0.948279
Target:  5'- cGCCggagAUCGGuggGAGCGG-CCGCGGGgagCGg -3'
miRNA:   3'- -CGGa---UGGCC---UUUGCUaGGCGCCUa--GC- -5'
9150 3' -53.8 NC_002512.2 + 6326 0.65 0.992726
Target:  5'- cGCCgcccgcggggggACCGGGcgcggggccGGCGggCCGCGGGcgCGu -3'
miRNA:   3'- -CGGa-----------UGGCCU---------UUGCuaGGCGCCUa-GC- -5'
9150 3' -53.8 NC_002512.2 + 6751 0.69 0.952311
Target:  5'- cGCUggAUCGGGaaGACGAUgacggacucgacCCGCGGAUCc -3'
miRNA:   3'- -CGGa-UGGCCU--UUGCUA------------GGCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 7025 0.66 0.991918
Target:  5'- gGCCuUGCCGGGcucgucguucggGACGAagcggcaguUCCGuCGGAagUCGc -3'
miRNA:   3'- -CGG-AUGGCCU------------UUGCU---------AGGC-GCCU--AGC- -5'
9150 3' -53.8 NC_002512.2 + 7238 0.7 0.919415
Target:  5'- gGCCcgGCCGGccgucgcggcgGAGCGGcgUCCGUcgGGAUCGg -3'
miRNA:   3'- -CGGa-UGGCC-----------UUUGCU--AGGCG--CCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 7306 0.66 0.991812
Target:  5'- gGCCUccuCCGcGAcGGCGggCCGCGGcgggacgGUCGg -3'
miRNA:   3'- -CGGAu--GGC-CU-UUGCuaGGCGCC-------UAGC- -5'
9150 3' -53.8 NC_002512.2 + 7447 0.66 0.988238
Target:  5'- gGCCgcggcCCGGggGaag-CCGCGGcgCGg -3'
miRNA:   3'- -CGGau---GGCCuuUgcuaGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 8043 0.68 0.974699
Target:  5'- cCCgguCCcGAGGCGcccCCGCGGGUCGg -3'
miRNA:   3'- cGGau-GGcCUUUGCua-GGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 8321 0.72 0.868493
Target:  5'- aGCaggGCCGGGAGCcgGAgaCCGCGGGUCc -3'
miRNA:   3'- -CGga-UGGCCUUUG--CUa-GGCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 8408 0.66 0.99081
Target:  5'- cGCCgagcGCCaGGAACGcgcaCCGCGGccgGUCGg -3'
miRNA:   3'- -CGGa---UGGcCUUUGCua--GGCGCC---UAGC- -5'
9150 3' -53.8 NC_002512.2 + 8534 0.66 0.991918
Target:  5'- aCCgACaCGGAGcgGCGAggCCGCGGucUCGg -3'
miRNA:   3'- cGGaUG-GCCUU--UGCUa-GGCGCCu-AGC- -5'
9150 3' -53.8 NC_002512.2 + 8928 0.66 0.99081
Target:  5'- gGCCUcgGCCGGGucGGCGAugaagagcgcguUCCGaCGGuagCGg -3'
miRNA:   3'- -CGGA--UGGCCU--UUGCU------------AGGC-GCCua-GC- -5'
9150 3' -53.8 NC_002512.2 + 11144 0.67 0.977124
Target:  5'- uCCgaggGCCGGAcACGcgCuCGaCGGGUCGu -3'
miRNA:   3'- cGGa---UGGCCUuUGCuaG-GC-GCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 11241 0.65 0.992629
Target:  5'- cGCCUccguccGCCGGGcgcgacagggucccGACGcgcguccuucgaGUCCGCGGG-CGa -3'
miRNA:   3'- -CGGA------UGGCCU--------------UUGC------------UAGGCGCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 14954 0.67 0.985139
Target:  5'- gGCC-ACgGGAgGACGAaCCGCGGccgCGg -3'
miRNA:   3'- -CGGaUGgCCU-UUGCUaGGCGCCua-GC- -5'
9150 3' -53.8 NC_002512.2 + 21464 0.68 0.971822
Target:  5'- gGCCggcGCCGGGAGCGGcgcccguagagcaUCCGCaGG-CGg -3'
miRNA:   3'- -CGGa--UGGCCUUUGCU-------------AGGCGcCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 24902 0.66 0.99081
Target:  5'- cGCCUuCCGGucccCGucgcCCGCGGcGUCGg -3'
miRNA:   3'- -CGGAuGGCCuuu-GCua--GGCGCC-UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.