miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9150 3' -53.8 NC_002512.2 + 77993 1.1 0.007508
Target:  5'- uGCCUACCGGAAACGAUCCGCGGAUCGc -3'
miRNA:   3'- -CGGAUGGCCUUUGCUAGGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 151863 0.84 0.29138
Target:  5'- cGCg-ACCGGAugacucgugggcgccGGCGAUCCGCGGAUCGu -3'
miRNA:   3'- -CGgaUGGCCU---------------UUGCUAGGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 42239 0.83 0.322972
Target:  5'- uCCUGCCGGAuauuacCGAUCCGCGGA-CGg -3'
miRNA:   3'- cGGAUGGCCUuu----GCUAGGCGCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 52404 0.77 0.584219
Target:  5'- aGCCgagGCCGaGAAGCGGUCgGCGGAc-- -3'
miRNA:   3'- -CGGa--UGGC-CUUUGCUAGgCGCCUagc -5'
9150 3' -53.8 NC_002512.2 + 137358 0.77 0.584219
Target:  5'- cGCCgcgGCCGGGua-GAUCCGCGcGGUCu -3'
miRNA:   3'- -CGGa--UGGCCUuugCUAGGCGC-CUAGc -5'
9150 3' -53.8 NC_002512.2 + 98536 0.76 0.653683
Target:  5'- cGCCgGCUGGGAccucgcccgGCGuUCCGCGGAUCc -3'
miRNA:   3'- -CGGaUGGCCUU---------UGCuAGGCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 223103 0.76 0.683356
Target:  5'- cGUCgACgGGGAggGgGAUCCGCGGGUCGa -3'
miRNA:   3'- -CGGaUGgCCUU--UgCUAGGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 143735 0.74 0.741398
Target:  5'- gGCCU--CGGAGGCGG-CCGCGGcGUCGg -3'
miRNA:   3'- -CGGAugGCCUUUGCUaGGCGCC-UAGC- -5'
9150 3' -53.8 NC_002512.2 + 81802 0.74 0.750805
Target:  5'- cGCCgccGCCGGGggacgGACGA-CCGCGGcgCGu -3'
miRNA:   3'- -CGGa--UGGCCU-----UUGCUaGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 217655 0.74 0.769317
Target:  5'- gGCCUGCUGGAagAACG-UCCuCGGGUCc -3'
miRNA:   3'- -CGGAUGGCCU--UUGCuAGGcGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 53741 0.74 0.778404
Target:  5'- -gCUGCUGcGcGACG-UCCGCGGAUCGa -3'
miRNA:   3'- cgGAUGGC-CuUUGCuAGGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 79959 0.73 0.784691
Target:  5'- cGCCUGCCgucGGAAGCGGUCggccgaggagggcgCGCGGAg-- -3'
miRNA:   3'- -CGGAUGG---CCUUUGCUAG--------------GCGCCUagc -5'
9150 3' -53.8 NC_002512.2 + 111808 0.73 0.787367
Target:  5'- cGCCggcGCCGGAGcCGcccccUCCGCGGAgUCGa -3'
miRNA:   3'- -CGGa--UGGCCUUuGCu----AGGCGCCU-AGC- -5'
9150 3' -53.8 NC_002512.2 + 228253 0.73 0.796198
Target:  5'- uGCCggACgCGGggGCGAcugaCCGCGGAcCGg -3'
miRNA:   3'- -CGGa-UG-GCCuuUGCUa---GGCGCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 166462 0.73 0.804889
Target:  5'- cGCCgggcucgagGgCGGGGACGGcgggaCCGCGGGUCGg -3'
miRNA:   3'- -CGGa--------UgGCCUUUGCUa----GGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 83095 0.73 0.813433
Target:  5'- gGCCUccuCCGGGuccGGCGGUCCGgcgucgguCGGGUCGu -3'
miRNA:   3'- -CGGAu--GGCCU---UUGCUAGGC--------GCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 204091 0.73 0.813433
Target:  5'- gGUCUACgCGGA--CGAUuacaucCCGCGGGUCGa -3'
miRNA:   3'- -CGGAUG-GCCUuuGCUA------GGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 95126 0.73 0.813433
Target:  5'- cGCCgacgaACCGGA--CGGUCCgccccgGCGGGUCGa -3'
miRNA:   3'- -CGGa----UGGCCUuuGCUAGG------CGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 196372 0.73 0.830047
Target:  5'- cGCCgGCCGGGcucacuuCGGgacgCCGCGGGUCu -3'
miRNA:   3'- -CGGaUGGCCUuu-----GCUa---GGCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 126390 0.72 0.845981
Target:  5'- cGCgCUGcCCGGcGAGCGGUCCGCGGc--- -3'
miRNA:   3'- -CG-GAU-GGCC-UUUGCUAGGCGCCuagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.