miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9150 3' -53.8 NC_002512.2 + 52404 0.77 0.584219
Target:  5'- aGCCgagGCCGaGAAGCGGUCgGCGGAc-- -3'
miRNA:   3'- -CGGa--UGGC-CUUUGCUAGgCGCCUagc -5'
9150 3' -53.8 NC_002512.2 + 194936 0.71 0.906205
Target:  5'- uGCCgACCGGucguUGGUCCugauguccgcccucGCGGAUCGa -3'
miRNA:   3'- -CGGaUGGCCuuu-GCUAGG--------------CGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 122007 0.71 0.90195
Target:  5'- cGCCcggagggGCCGGAGGCG----GCGGAUCGg -3'
miRNA:   3'- -CGGa------UGGCCUUUGCuaggCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 45315 0.71 0.90195
Target:  5'- cCCUGCCGGc------CCGCGGGUCGg -3'
miRNA:   3'- cGGAUGGCCuuugcuaGGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 48727 0.71 0.895686
Target:  5'- aCCUGCUGGAGGaccuggCCGCGGAgUCGu -3'
miRNA:   3'- cGGAUGGCCUUUgcua--GGCGCCU-AGC- -5'
9150 3' -53.8 NC_002512.2 + 50593 0.71 0.895686
Target:  5'- cGCCcgcggACUGGAcgguGCGAUCCGgGGA-CGa -3'
miRNA:   3'- -CGGa----UGGCCUu---UGCUAGGCgCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 103082 0.71 0.889204
Target:  5'- -aCUACgGGAGGCGAUCcCGgGGA-CGg -3'
miRNA:   3'- cgGAUGgCCUUUGCUAG-GCgCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 70837 0.71 0.889204
Target:  5'- cGCCUcgccCCGG-GACGAgaugCCGCGGAgaagUCGu -3'
miRNA:   3'- -CGGAu---GGCCuUUGCUa---GGCGCCU----AGC- -5'
9150 3' -53.8 NC_002512.2 + 126920 0.71 0.882509
Target:  5'- cGUCUgguACCGGGAccACGAguucUCCGCGGAcuccgUCGc -3'
miRNA:   3'- -CGGA---UGGCCUU--UGCU----AGGCGCCU-----AGC- -5'
9150 3' -53.8 NC_002512.2 + 3228 0.71 0.882509
Target:  5'- aGUCUGgacccggcgcgUCGGGugacGACGGUCCGCGGGcUCGg -3'
miRNA:   3'- -CGGAU-----------GGCCU----UUGCUAGGCGCCU-AGC- -5'
9150 3' -53.8 NC_002512.2 + 8321 0.72 0.868493
Target:  5'- aGCaggGCCGGGAGCcgGAgaCCGCGGGUCc -3'
miRNA:   3'- -CGga-UGGCCUUUG--CUa-GGCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 2087 0.72 0.868493
Target:  5'- cGCCgGgCGGGAGCGGgcgguacggCCGCGGcUCGg -3'
miRNA:   3'- -CGGaUgGCCUUUGCUa--------GGCGCCuAGC- -5'
9150 3' -53.8 NC_002512.2 + 126390 0.72 0.845981
Target:  5'- cGCgCUGcCCGGcGAGCGGUCCGCGGc--- -3'
miRNA:   3'- -CG-GAU-GGCC-UUUGCUAGGCGCCuagc -5'
9150 3' -53.8 NC_002512.2 + 83095 0.73 0.813433
Target:  5'- gGCCUccuCCGGGuccGGCGGUCCGgcgucgguCGGGUCGu -3'
miRNA:   3'- -CGGAu--GGCCU---UUGCUAGGC--------GCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 79959 0.73 0.784691
Target:  5'- cGCCUGCCgucGGAAGCGGUCggccgaggagggcgCGCGGAg-- -3'
miRNA:   3'- -CGGAUGG---CCUUUGCUAG--------------GCGCCUagc -5'
9150 3' -53.8 NC_002512.2 + 53741 0.74 0.778404
Target:  5'- -gCUGCUGcGcGACG-UCCGCGGAUCGa -3'
miRNA:   3'- cgGAUGGC-CuUUGCuAGGCGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 81802 0.74 0.750805
Target:  5'- cGCCgccGCCGGGggacgGACGA-CCGCGGcgCGu -3'
miRNA:   3'- -CGGa--UGGCCU-----UUGCUaGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 98536 0.76 0.653683
Target:  5'- cGCCgGCUGGGAccucgcccgGCGuUCCGCGGAUCc -3'
miRNA:   3'- -CGGaUGGCCUU---------UGCuAGGCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 137358 0.77 0.584219
Target:  5'- cGCCgcgGCCGGGua-GAUCCGCGcGGUCu -3'
miRNA:   3'- -CGGa--UGGCCUuugCUAGGCGC-CUAGc -5'
9150 3' -53.8 NC_002512.2 + 151863 0.84 0.29138
Target:  5'- cGCg-ACCGGAugacucgugggcgccGGCGAUCCGCGGAUCGu -3'
miRNA:   3'- -CGgaUGGCCU---------------UUGCUAGGCGCCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.