miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 209994 0.68 0.698603
Target:  5'- cGGGGuuCCUcCgCGACCGCCUgCGGAc -3'
miRNA:   3'- -CCCCcuGGAaG-GCUGGCGGGgGCUUc -5'
9153 3' -61.6 NC_002512.2 + 209033 0.67 0.750601
Target:  5'- cGGGGcGGCCgcgucccggagcgaUUCCGACgGCuCCuCCGAc- -3'
miRNA:   3'- -CCCC-CUGG--------------AAGGCUGgCG-GG-GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 208817 0.67 0.735334
Target:  5'- -cGGGACCgccgcCCGugCGCCCUCa--- -3'
miRNA:   3'- ccCCCUGGaa---GGCugGCGGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 207745 0.7 0.594025
Target:  5'- cGGGGGACgcUCCGggguggaGCCGCCgCCGuGGu -3'
miRNA:   3'- -CCCCCUGgaAGGC-------UGGCGGgGGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 205032 0.67 0.75238
Target:  5'- -cGGGGCCgcgUCCG-CCGCCgaccggccgcgggCCCGGAc -3'
miRNA:   3'- ccCCCUGGa--AGGCuGGCGG-------------GGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 204664 0.68 0.698603
Target:  5'- cGGGGGAUCg-CCGGCggcuCGCUCCCGc-- -3'
miRNA:   3'- -CCCCCUGGaaGGCUG----GCGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 202228 0.67 0.761224
Target:  5'- cGGGGuucgucuccauccGACCUcCCGuuuCCGCCucgcgCCCGGAGc -3'
miRNA:   3'- -CCCC-------------CUGGAaGGCu--GGCGG-----GGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 201798 0.72 0.442156
Target:  5'- cGGGGcggcGACCUcUCCGccgucuccGCCGCgCCCGggGg -3'
miRNA:   3'- -CCCC----CUGGA-AGGC--------UGGCGgGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 195535 0.67 0.762103
Target:  5'- cGGGGuACCUccUCCGcCCGCUcagcuCCCGGGu -3'
miRNA:   3'- cCCCC-UGGA--AGGCuGGCGG-----GGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 194635 0.67 0.762103
Target:  5'- cGGGGGACCUgcCCGuCCucuUCUCCGAu- -3'
miRNA:   3'- -CCCCCUGGAa-GGCuGGc--GGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 194545 0.66 0.81279
Target:  5'- -cGGGACaa-CCGuaACCGCCCCgGGAa -3'
miRNA:   3'- ccCCCUGgaaGGC--UGGCGGGGgCUUc -5'
9153 3' -61.6 NC_002512.2 + 190874 0.68 0.670529
Target:  5'- cGGGGGGCUUUCC--CCGCgUCgCGggGc -3'
miRNA:   3'- -CCCCCUGGAAGGcuGGCGgGG-GCuuC- -5'
9153 3' -61.6 NC_002512.2 + 190431 0.66 0.776891
Target:  5'- cGGGagcGGGCCgucaCCGACCGggacgugaccuccaCCCCCGuGGa -3'
miRNA:   3'- -CCC---CCUGGaa--GGCUGGC--------------GGGGGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 189766 0.66 0.81279
Target:  5'- cGGGGGACaaaaUCCGuccucCCGCCguaCGAGGc -3'
miRNA:   3'- -CCCCCUGga--AGGCu----GGCGGgg-GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 188658 0.67 0.770839
Target:  5'- cGGcGGcGGCCcgucgUCCGACCGCggcggUCUCGggGa -3'
miRNA:   3'- -CC-CC-CUGGa----AGGCUGGCG-----GGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 185538 0.71 0.539084
Target:  5'- gGGGGuGGCCUaCCGGCCccgcggcgugGCCgUCGAGGg -3'
miRNA:   3'- -CCCC-CUGGAaGGCUGG----------CGGgGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 184808 0.69 0.642213
Target:  5'- cGGGGaGAcCCUUCCGcGCCGgCCgCGAc- -3'
miRNA:   3'- -CCCC-CU-GGAAGGC-UGGCgGGgGCUuc -5'
9153 3' -61.6 NC_002512.2 + 184408 0.7 0.584625
Target:  5'- cGGGGGgcgcucgGCCUUCuccgucgccuCGGCCGCCgCCGGc- -3'
miRNA:   3'- -CCCCC-------UGGAAG----------GCUGGCGGgGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 182275 0.66 0.81279
Target:  5'- cGGGGaACUgcacgUCCGuCCGCuCCCUGGc- -3'
miRNA:   3'- cCCCC-UGGa----AGGCuGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 176024 0.68 0.707876
Target:  5'- uGGGGAacggacggucccCCUcuccUCCcggcGCCGCCCCCGGGu -3'
miRNA:   3'- cCCCCU------------GGA----AGGc---UGGCGGGGGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.