miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 5' -60.9 NC_002512.2 + 219021 0.66 0.816364
Target:  5'- uGCUGCUGcgaCgUGCuggucuacgUCGUCGgCCGCg -3'
miRNA:   3'- gCGACGACua-GgACG---------AGCGGCgGGCG- -5'
9154 5' -60.9 NC_002512.2 + 2316 0.66 0.808115
Target:  5'- uGCUGCgccggcGGUCCggagGCcucggUCGCgGaCCCGCc -3'
miRNA:   3'- gCGACGa-----CUAGGa---CG-----AGCGgC-GGGCG- -5'
9154 5' -60.9 NC_002512.2 + 208393 0.66 0.811432
Target:  5'- aCGCUGC-GAggcccgCCUGCggaugcucuacgggCGCCGCUCccgGCg -3'
miRNA:   3'- -GCGACGaCUa-----GGACGa-------------GCGGCGGG---CG- -5'
9154 5' -60.9 NC_002512.2 + 81654 0.66 0.815546
Target:  5'- gCGUUGCUGAUggcgaacaCCUugUCGUacaugagCGCCCGCa -3'
miRNA:   3'- -GCGACGACUA--------GGAcgAGCG-------GCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 72844 0.66 0.764881
Target:  5'- cCGCcuUGCcgGGUCCUcGCUCcggGCCGCgUCGCc -3'
miRNA:   3'- -GCG--ACGa-CUAGGA-CGAG---CGGCG-GGCG- -5'
9154 5' -60.9 NC_002512.2 + 119250 0.66 0.768449
Target:  5'- gGCgGCUGgAUCCcgGCgaccccauggucugCGCCGCCCa- -3'
miRNA:   3'- gCGaCGAC-UAGGa-CGa-------------GCGGCGGGcg -5'
9154 5' -60.9 NC_002512.2 + 116151 0.66 0.808115
Target:  5'- cCGC-GCaccucggCCcGCagaUCGCCGCCCGCg -3'
miRNA:   3'- -GCGaCGacua---GGaCG---AGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 135339 0.66 0.773769
Target:  5'- aGCcGCgccggGGUgCUGCUgGCCGUcgaCCGCu -3'
miRNA:   3'- gCGaCGa----CUAgGACGAgCGGCG---GGCG- -5'
9154 5' -60.9 NC_002512.2 + 2614 0.66 0.791198
Target:  5'- uGgUGCUGuucuccgccGUCCUgucGCUCGUCcugauGCCCGCc -3'
miRNA:   3'- gCgACGAC---------UAGGA---CGAGCGG-----CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 54883 0.66 0.794624
Target:  5'- -cCUGCUGGgacgaagaUCCUGCcgaaggaggugcugCGCUGCCUGUg -3'
miRNA:   3'- gcGACGACU--------AGGACGa-------------GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 62930 0.66 0.790338
Target:  5'- aGCUGCUGcuuguccaugaacAUCCgcUGCuucucgUCGCCGCaCGCc -3'
miRNA:   3'- gCGACGAC-------------UAGG--ACG------AGCGGCGgGCG- -5'
9154 5' -60.9 NC_002512.2 + 856 0.66 0.791198
Target:  5'- -cCUGCc---UCUGCUcCGCCGUCCGCu -3'
miRNA:   3'- gcGACGacuaGGACGA-GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 112180 0.66 0.788614
Target:  5'- uCGCUGCgcacccgccgcaggUGcgCCacgcaGCUCGUCGaCCCGUa -3'
miRNA:   3'- -GCGACG--------------ACuaGGa----CGAGCGGC-GGGCG- -5'
9154 5' -60.9 NC_002512.2 + 97280 0.66 0.788614
Target:  5'- aCGCaucggggagGCcGAgcgUCUGCUCGCCgaaccccuggccgcGCCCGCc -3'
miRNA:   3'- -GCGa--------CGaCUa--GGACGAGCGG--------------CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 126391 0.66 0.764881
Target:  5'- gCGCUGCccggcgagcGGUCCgcgGC-CGCCGCcgagacccgagCCGCg -3'
miRNA:   3'- -GCGACGa--------CUAGGa--CGaGCGGCG-----------GGCG- -5'
9154 5' -60.9 NC_002512.2 + 24337 0.66 0.791198
Target:  5'- gGCUGUUGAUguucaagcCCUGCagcUGCCGCUguaUGCg -3'
miRNA:   3'- gCGACGACUA--------GGACGa--GCGGCGG---GCG- -5'
9154 5' -60.9 NC_002512.2 + 126364 0.66 0.816364
Target:  5'- aCGC-GUUcacGGUCCU-CUgGCCGCCCGg -3'
miRNA:   3'- -GCGaCGA---CUAGGAcGAgCGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 123292 0.66 0.808115
Target:  5'- gCGCcgGCUGGcCCgGUUCGCCaagaagcggguGUCCGCc -3'
miRNA:   3'- -GCGa-CGACUaGGaCGAGCGG-----------CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 213043 0.66 0.816364
Target:  5'- gGCUGCggggGAUCgaGaUCGCCcuGCCCaGCc -3'
miRNA:   3'- gCGACGa---CUAGgaCgAGCGG--CGGG-CG- -5'
9154 5' -60.9 NC_002512.2 + 82669 0.66 0.808115
Target:  5'- uCGCUGUUuucgcGGUCCcGCUCggGCUGUCgGCg -3'
miRNA:   3'- -GCGACGA-----CUAGGaCGAG--CGGCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.