miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 5' -60.9 NC_002512.2 + 77063 1.1 0.001408
Target:  5'- gCGCUGCUGAUCCUGCUCGCCGCCCGCc -3'
miRNA:   3'- -GCGACGACUAGGACGAGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 50568 0.84 0.081333
Target:  5'- gCGCUGCagGAUCUgcccGcCUCGCCGCCCGCg -3'
miRNA:   3'- -GCGACGa-CUAGGa---C-GAGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 214235 0.8 0.158374
Target:  5'- gGCgGCUcGUCg-GCUCGCCGCCCGCg -3'
miRNA:   3'- gCGaCGAcUAGgaCGAGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 172246 0.79 0.187165
Target:  5'- aGC-GCUGGUCgguCUGCUCGCCucacGCCCGCu -3'
miRNA:   3'- gCGaCGACUAG---GACGAGCGG----CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 101432 0.78 0.191636
Target:  5'- uCGCUgucGCUGuUCCUGCUgggccaugGCCGCCCGCg -3'
miRNA:   3'- -GCGA---CGACuAGGACGAg-------CGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 116974 0.76 0.270566
Target:  5'- aGCUGCUGAUCgaGCUgGuCCGCgaCGCg -3'
miRNA:   3'- gCGACGACUAGgaCGAgC-GGCGg-GCG- -5'
9154 5' -60.9 NC_002512.2 + 6302 0.76 0.282874
Target:  5'- uGCUGCUGuacacgUCgaggugGC-CGCCGCCCGCg -3'
miRNA:   3'- gCGACGACua----GGa-----CGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 48529 0.76 0.289193
Target:  5'- uGCUgaaGCUGAUCCacGCgUGCCGCCUGCu -3'
miRNA:   3'- gCGA---CGACUAGGa-CGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 226504 0.76 0.289193
Target:  5'- uCGCcGCgGGUCCUGCUgGCgGCCCuGCc -3'
miRNA:   3'- -GCGaCGaCUAGGACGAgCGgCGGG-CG- -5'
9154 5' -60.9 NC_002512.2 + 181528 0.75 0.302162
Target:  5'- uCGCUGCcGuUCagcaGCUCGCaCGCCCGCg -3'
miRNA:   3'- -GCGACGaCuAGga--CGAGCG-GCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 185324 0.75 0.308812
Target:  5'- aGCUGCccg-UCUGCgUCGCCGCCCGg -3'
miRNA:   3'- gCGACGacuaGGACG-AGCGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 215535 0.75 0.315574
Target:  5'- cCGCccuccgGgaGAUCCUGCUgGCCGUCgGCg -3'
miRNA:   3'- -GCGa-----CgaCUAGGACGAgCGGCGGgCG- -5'
9154 5' -60.9 NC_002512.2 + 28530 0.75 0.315574
Target:  5'- aGCUGUcgGGUCC-GC-CGCCGCCCGa -3'
miRNA:   3'- gCGACGa-CUAGGaCGaGCGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 128023 0.73 0.381404
Target:  5'- gGCUGCUGcggCCgggucGCUCGCUGCCUcugGCg -3'
miRNA:   3'- gCGACGACua-GGa----CGAGCGGCGGG---CG- -5'
9154 5' -60.9 NC_002512.2 + 116643 0.73 0.381404
Target:  5'- uCGCUGCcGAggcUCCUGCU-GCCguGCCCGUc -3'
miRNA:   3'- -GCGACGaCU---AGGACGAgCGG--CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 130689 0.73 0.389262
Target:  5'- gGCUGCucgUGGUgggGCcCGCCGCCCGCa -3'
miRNA:   3'- gCGACG---ACUAggaCGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 90314 0.73 0.394027
Target:  5'- gCGgaGCUGAgcgCCUGCgaggagaucaccgUGCUGCCCGUg -3'
miRNA:   3'- -GCgaCGACUa--GGACGa------------GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 139085 0.73 0.397225
Target:  5'- gCGUUGaaGAUCgaGCggaUCGUCGCCCGCg -3'
miRNA:   3'- -GCGACgaCUAGgaCG---AGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 220129 0.73 0.405292
Target:  5'- aCGCgggGCggcgGGUCCgGCUcCGCCGCCCcCa -3'
miRNA:   3'- -GCGa--CGa---CUAGGaCGA-GCGGCGGGcG- -5'
9154 5' -60.9 NC_002512.2 + 3149 0.73 0.413462
Target:  5'- cCGgaGCccGGUCCcGCcgUCGUCGCCCGCg -3'
miRNA:   3'- -GCgaCGa-CUAGGaCG--AGCGGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.