miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 5' -60.9 NC_002512.2 + 101432 0.78 0.191636
Target:  5'- uCGCUgucGCUGuUCCUGCUgggccaugGCCGCCCGCg -3'
miRNA:   3'- -GCGA---CGACuAGGACGAg-------CGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 147467 0.69 0.603961
Target:  5'- uCGCUGCUGGUCUUcGCgcgggCGCUGCggacgggCGCg -3'
miRNA:   3'- -GCGACGACUAGGA-CGa----GCGGCGg------GCG- -5'
9154 5' -60.9 NC_002512.2 + 69097 0.7 0.584734
Target:  5'- uGCUGCcgUGGcUgCUGCUgCGCCGgcCCCGCu -3'
miRNA:   3'- gCGACG--ACU-AgGACGA-GCGGC--GGGCG- -5'
9154 5' -60.9 NC_002512.2 + 40659 0.7 0.575164
Target:  5'- cCGCgacgGCgacggacgGAUCCgacgucgaGCaUGCCGCCCGCg -3'
miRNA:   3'- -GCGa---CGa-------CUAGGa-------CGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 137994 0.7 0.575164
Target:  5'- aGCggGCcgUGcgCCgcGC-CGCCGCCCGCg -3'
miRNA:   3'- gCGa-CG--ACuaGGa-CGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 139436 0.7 0.556136
Target:  5'- cCGCaGCUGGcCCgGC-CGCCGCCCu- -3'
miRNA:   3'- -GCGaCGACUaGGaCGaGCGGCGGGcg -5'
9154 5' -60.9 NC_002512.2 + 110780 0.7 0.556136
Target:  5'- cCGCaGCUGcgCCgag--GCCGCCCGCa -3'
miRNA:   3'- -GCGaCGACuaGGacgagCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 137735 0.71 0.51868
Target:  5'- gGUcgGCaGGUCCUGCacgCGCCgcagcGCCCGCa -3'
miRNA:   3'- gCGa-CGaCUAGGACGa--GCGG-----CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 59481 0.71 0.503974
Target:  5'- gGCUGCUGGacuacagCCUGCUgugccagaagugcagCGCgGCgCCGCg -3'
miRNA:   3'- gCGACGACUa------GGACGA---------------GCGgCG-GGCG- -5'
9154 5' -60.9 NC_002512.2 + 12408 0.71 0.500325
Target:  5'- gGCgGCgccggGAUCgCgaGCUCGCCGCgCGCg -3'
miRNA:   3'- gCGaCGa----CUAG-Ga-CGAGCGGCGgGCG- -5'
9154 5' -60.9 NC_002512.2 + 47701 0.72 0.473351
Target:  5'- gCGgUGUUcgccAUCCUGCgCGCCGCCuCGCg -3'
miRNA:   3'- -GCgACGAc---UAGGACGaGCGGCGG-GCG- -5'
9154 5' -60.9 NC_002512.2 + 3149 0.73 0.413462
Target:  5'- cCGgaGCccGGUCCcGCcgUCGUCGCCCGCg -3'
miRNA:   3'- -GCgaCGa-CUAGGaCG--AGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 139085 0.73 0.397225
Target:  5'- gCGUUGaaGAUCgaGCggaUCGUCGCCCGCg -3'
miRNA:   3'- -GCGACgaCUAGgaCG---AGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 130689 0.73 0.389262
Target:  5'- gGCUGCucgUGGUgggGCcCGCCGCCCGCa -3'
miRNA:   3'- gCGACG---ACUAggaCGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 128023 0.73 0.381404
Target:  5'- gGCUGCUGcggCCgggucGCUCGCUGCCUcugGCg -3'
miRNA:   3'- gCGACGACua-GGa----CGAGCGGCGGG---CG- -5'
9154 5' -60.9 NC_002512.2 + 116643 0.73 0.381404
Target:  5'- uCGCUGCcGAggcUCCUGCU-GCCguGCCCGUc -3'
miRNA:   3'- -GCGACGaCU---AGGACGAgCGG--CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 28530 0.75 0.315574
Target:  5'- aGCUGUcgGGUCC-GC-CGCCGCCCGa -3'
miRNA:   3'- gCGACGa-CUAGGaCGaGCGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 48529 0.76 0.289193
Target:  5'- uGCUgaaGCUGAUCCacGCgUGCCGCCUGCu -3'
miRNA:   3'- gCGA---CGACUAGGa-CGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 6302 0.76 0.282874
Target:  5'- uGCUGCUGuacacgUCgaggugGC-CGCCGCCCGCg -3'
miRNA:   3'- gCGACGACua----GGa-----CGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 50568 0.84 0.081333
Target:  5'- gCGCUGCagGAUCUgcccGcCUCGCCGCCCGCg -3'
miRNA:   3'- -GCGACGa-CUAGGa---C-GAGCGGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.