miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 5' -60.9 NC_002512.2 + 856 0.66 0.791198
Target:  5'- -cCUGCc---UCUGCUcCGCCGUCCGCu -3'
miRNA:   3'- gcGACGacuaGGACGA-GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 1077 0.67 0.709621
Target:  5'- aGCUGCUuGAUCgUcUUCGCCGCCa-- -3'
miRNA:   3'- gCGACGA-CUAGgAcGAGCGGCGGgcg -5'
9154 5' -60.9 NC_002512.2 + 2253 0.68 0.690649
Target:  5'- gCGCUccgucGcCUGA-CCUcGCcgcCGCCGCCCGCc -3'
miRNA:   3'- -GCGA-----C-GACUaGGA-CGa--GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 2316 0.66 0.808115
Target:  5'- uGCUGCgccggcGGUCCggagGCcucggUCGCgGaCCCGCc -3'
miRNA:   3'- gCGACGa-----CUAGGa---CG-----AGCGgC-GGGCG- -5'
9154 5' -60.9 NC_002512.2 + 2614 0.66 0.791198
Target:  5'- uGgUGCUGuucuccgccGUCCUgucGCUCGUCcugauGCCCGCc -3'
miRNA:   3'- gCgACGAC---------UAGGA---CGAGCGG-----CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 2722 0.68 0.671503
Target:  5'- gGCUGCUcGUCCUGC-CGUU-CCUGCu -3'
miRNA:   3'- gCGACGAcUAGGACGaGCGGcGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 2749 0.67 0.728358
Target:  5'- uGCUGUgGAUCCUGCgucuggucUGCa-CCCGCu -3'
miRNA:   3'- gCGACGaCUAGGACGa-------GCGgcGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 3149 0.73 0.413462
Target:  5'- cCGgaGCccGGUCCcGCcgUCGUCGCCCGCg -3'
miRNA:   3'- -GCgaCGa-CUAGGaCG--AGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 4067 0.69 0.613606
Target:  5'- cCGCgGCUcgaGGUCCcagGCcacccgGCCGCCCGCg -3'
miRNA:   3'- -GCGaCGA---CUAGGa--CGag----CGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 4703 0.67 0.728358
Target:  5'- aGCUGCUGGagcaacugcUgCUGCUgcaaCGCCGCCgacgacUGCg -3'
miRNA:   3'- gCGACGACU---------AgGACGA----GCGGCGG------GCG- -5'
9154 5' -60.9 NC_002512.2 + 4817 0.68 0.70016
Target:  5'- aGCUGCUGcgggacGUgUUGCgCGCCGCCgaggagCGCg -3'
miRNA:   3'- gCGACGAC------UAgGACGaGCGGCGG------GCG- -5'
9154 5' -60.9 NC_002512.2 + 5969 0.67 0.73762
Target:  5'- cCGUccgGCUcGA-CCU-CUCGCCGCgCCGCu -3'
miRNA:   3'- -GCGa--CGA-CUaGGAcGAGCGGCG-GGCG- -5'
9154 5' -60.9 NC_002512.2 + 6302 0.76 0.282874
Target:  5'- uGCUGCUGuacacgUCgaggugGC-CGCCGCCCGCg -3'
miRNA:   3'- gCGACGACua----GGa-----CGaGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 12048 0.68 0.652243
Target:  5'- cCGCUGCcGccUCUGC-CGaaCCGCCCGCc -3'
miRNA:   3'- -GCGACGaCuaGGACGaGC--GGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 12408 0.71 0.500325
Target:  5'- gGCgGCgccggGAUCgCgaGCUCGCCGCgCGCg -3'
miRNA:   3'- gCGaCGa----CUAG-Ga-CGAGCGGCGgGCG- -5'
9154 5' -60.9 NC_002512.2 + 12765 0.69 0.623263
Target:  5'- cCGCUGCUGccgCCgcaggacucgGCggCGCC-CCCGCu -3'
miRNA:   3'- -GCGACGACua-GGa---------CGa-GCGGcGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 21313 0.68 0.70016
Target:  5'- cCGCUGCgcGUCgaGCUCGgccugacgcaCCGCCCuGCu -3'
miRNA:   3'- -GCGACGacUAGgaCGAGC----------GGCGGG-CG- -5'
9154 5' -60.9 NC_002512.2 + 24337 0.66 0.791198
Target:  5'- gGCUGUUGAUguucaagcCCUGCagcUGCCGCUguaUGCg -3'
miRNA:   3'- gCGACGACUA--------GGACGa--GCGGCGG---GCG- -5'
9154 5' -60.9 NC_002512.2 + 28530 0.75 0.315574
Target:  5'- aGCUGUcgGGUCC-GC-CGCCGCCCGa -3'
miRNA:   3'- gCGACGa-CUAGGaCGaGCGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 29487 0.68 0.660921
Target:  5'- cCGuCUGCUcccucccggccgaGAUCCUGCa-GCC-CCCGCc -3'
miRNA:   3'- -GC-GACGA-------------CUAGGACGagCGGcGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.