miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9174 5' -54.5 NC_002512.2 + 219418 0.66 0.986996
Target:  5'- aCGccCACGCcCGGGGCGgCGGcgGccUCCu -3'
miRNA:   3'- aGCa-GUGCGaGCUCCGC-GCCuuU--AGG- -5'
9174 5' -54.5 NC_002512.2 + 181978 0.66 0.986996
Target:  5'- aCGUCAccaucCGCaCGuAGGUGgCGGAcGUCCu -3'
miRNA:   3'- aGCAGU-----GCGaGC-UCCGC-GCCUuUAGG- -5'
9174 5' -54.5 NC_002512.2 + 171514 0.66 0.986996
Target:  5'- cCGUCACcCUCGAGGaCGUcGAGcgCa -3'
miRNA:   3'- aGCAGUGcGAGCUCC-GCGcCUUuaGg -5'
9174 5' -54.5 NC_002512.2 + 74580 0.66 0.986996
Target:  5'- gCGcUCuggUGCUCGAGGC-CGGGGcccUCCg -3'
miRNA:   3'- aGC-AGu--GCGAGCUCCGcGCCUUu--AGG- -5'
9174 5' -54.5 NC_002512.2 + 132443 0.66 0.9854
Target:  5'- -gGUUGCGCUCcccGGCGgCGGG--UCCg -3'
miRNA:   3'- agCAGUGCGAGcu-CCGC-GCCUuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 198032 0.66 0.9854
Target:  5'- aCG-CGCGCgCGAGGggaCGCGGucGUCa -3'
miRNA:   3'- aGCaGUGCGaGCUCC---GCGCCuuUAGg -5'
9174 5' -54.5 NC_002512.2 + 103442 0.66 0.9854
Target:  5'- gUCGUCccgguccgaGCGCgggucCGAGGaCGCGGcucGGGUCUc -3'
miRNA:   3'- -AGCAG---------UGCGa----GCUCC-GCGCC---UUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 108822 0.66 0.9854
Target:  5'- gCGagGCGUgCGAGGUGUacGGAGcGUCCg -3'
miRNA:   3'- aGCagUGCGaGCUCCGCG--CCUU-UAGG- -5'
9174 5' -54.5 NC_002512.2 + 139523 0.66 0.9854
Target:  5'- aCGaaACGUUcCGAGGaaaCGCGGAGAccaUCCu -3'
miRNA:   3'- aGCagUGCGA-GCUCC---GCGCCUUU---AGG- -5'
9174 5' -54.5 NC_002512.2 + 188928 0.66 0.983659
Target:  5'- -aGUCcCGguggCGGGGCGCGGcgGUCg -3'
miRNA:   3'- agCAGuGCga--GCUCCGCGCCuuUAGg -5'
9174 5' -54.5 NC_002512.2 + 3695 0.66 0.983659
Target:  5'- cCG-CGCGCUaacGGCGCGGccGUCUc -3'
miRNA:   3'- aGCaGUGCGAgcuCCGCGCCuuUAGG- -5'
9174 5' -54.5 NC_002512.2 + 144540 0.66 0.983659
Target:  5'- -gGUCcuCGUgugCGAcGCGCGGAAGcUCCa -3'
miRNA:   3'- agCAGu-GCGa--GCUcCGCGCCUUU-AGG- -5'
9174 5' -54.5 NC_002512.2 + 146841 0.66 0.983659
Target:  5'- -gGUCGCcuggcccaggguGCUCGAGcucGCGCGGGg--CCa -3'
miRNA:   3'- agCAGUG------------CGAGCUC---CGCGCCUuuaGG- -5'
9174 5' -54.5 NC_002512.2 + 174353 0.66 0.983659
Target:  5'- cUCGUC-CGC-CGGGaUGCGGAuggCCg -3'
miRNA:   3'- -AGCAGuGCGaGCUCcGCGCCUuuaGG- -5'
9174 5' -54.5 NC_002512.2 + 192018 0.66 0.983659
Target:  5'- cCGUcCugGC---GGGCGCGGGAgcggcgGUCCu -3'
miRNA:   3'- aGCA-GugCGagcUCCGCGCCUU------UAGG- -5'
9174 5' -54.5 NC_002512.2 + 224591 0.66 0.983659
Target:  5'- -gGUUACG-UCaGGGCGCGGGAcgCg -3'
miRNA:   3'- agCAGUGCgAGcUCCGCGCCUUuaGg -5'
9174 5' -54.5 NC_002512.2 + 216056 0.66 0.981766
Target:  5'- aCGg-GCGUUCGGGGC-CGGG--UCCu -3'
miRNA:   3'- aGCagUGCGAGCUCCGcGCCUuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 205073 0.66 0.981766
Target:  5'- ---aCugGCUgGAGaGCgGCGGcGAUCCg -3'
miRNA:   3'- agcaGugCGAgCUC-CG-CGCCuUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 177184 0.66 0.981766
Target:  5'- cCG-CGuCGUUCGGGGaCGUcgucuGGGGAUCCa -3'
miRNA:   3'- aGCaGU-GCGAGCUCC-GCG-----CCUUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 159361 0.66 0.981766
Target:  5'- gCGUCGgGgUCGGGGCgucccauucGCGGG--UCCc -3'
miRNA:   3'- aGCAGUgCgAGCUCCG---------CGCCUuuAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.