miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 3' -58.5 NC_002512.2 + 184468 0.66 0.912497
Target:  5'- cGCGGCCGGCgCCgccgUCGAGcGcCCGc -3'
miRNA:   3'- -CGUUGGCCGgGGaua-GGCUC-CaGGCu -5'
9175 3' -58.5 NC_002512.2 + 127751 0.66 0.912497
Target:  5'- cGCGGCCguagacggccagGGUCCCccUCCGAcGG-CCGAg -3'
miRNA:   3'- -CGUUGG------------CCGGGGauAGGCU-CCaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 219336 0.66 0.912497
Target:  5'- gGCGuggcccGCCGGCugCCCggcGUCCGcgAGGUCCu- -3'
miRNA:   3'- -CGU------UGGCCG--GGGa--UAGGC--UCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 34506 0.66 0.912497
Target:  5'- cGgAACCGaGCguggaCCUAUCCGAGGacgCCa- -3'
miRNA:   3'- -CgUUGGC-CGg----GGAUAGGCUCCa--GGcu -5'
9175 3' -58.5 NC_002512.2 + 222143 0.66 0.912497
Target:  5'- cGCc-CCGGCUCCgcccCCGAGGaCCGc -3'
miRNA:   3'- -CGuuGGCCGGGGaua-GGCUCCaGGCu -5'
9175 3' -58.5 NC_002512.2 + 210063 0.66 0.906764
Target:  5'- uCGACCuGGCCCUcaUGUCCGucGGacagaUCCGGa -3'
miRNA:   3'- cGUUGG-CCGGGG--AUAGGCu-CC-----AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 157354 0.66 0.906764
Target:  5'- --cGCCuGGCCg----CCGAGGUCCGGg -3'
miRNA:   3'- cguUGG-CCGGggauaGGCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 145907 0.66 0.90082
Target:  5'- cGCGACC-GCCCCgcgCCGGGcaUCCGc -3'
miRNA:   3'- -CGUUGGcCGGGGauaGGCUCc-AGGCu -5'
9175 3' -58.5 NC_002512.2 + 191499 0.66 0.894666
Target:  5'- gGCGACCGGCgcgcuCCCUuccuaCGAGGaggCCGu -3'
miRNA:   3'- -CGUUGGCCG-----GGGAuag--GCUCCa--GGCu -5'
9175 3' -58.5 NC_002512.2 + 90639 0.66 0.894666
Target:  5'- cGCGAcCCGGCgCCgcggCCGcGGUCuCGGa -3'
miRNA:   3'- -CGUU-GGCCGgGGaua-GGCuCCAG-GCU- -5'
9175 3' -58.5 NC_002512.2 + 182062 0.66 0.888305
Target:  5'- cCAGCCGcGCCgaccucagCCgcggcUCCGGGGUCUGGg -3'
miRNA:   3'- cGUUGGC-CGG--------GGau---AGGCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 189684 0.66 0.888305
Target:  5'- uGguACCGGCggCCCUcgucgucgacGUCCGGGGgaugUCGGg -3'
miRNA:   3'- -CguUGGCCG--GGGA----------UAGGCUCCa---GGCU- -5'
9175 3' -58.5 NC_002512.2 + 141140 0.66 0.888305
Target:  5'- --cACCGGCUCgg--CCGGGGUCCu- -3'
miRNA:   3'- cguUGGCCGGGgauaGGCUCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 199929 0.67 0.881742
Target:  5'- cGCGGCCGGCCgCCgcucaCCGGcuGUCCa- -3'
miRNA:   3'- -CGUUGGCCGG-GGaua--GGCUc-CAGGcu -5'
9175 3' -58.5 NC_002512.2 + 101212 0.67 0.881742
Target:  5'- aCGA-CGGCCCC-GUCCGccGGGuUCCGGc -3'
miRNA:   3'- cGUUgGCCGGGGaUAGGC--UCC-AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 95763 0.67 0.881742
Target:  5'- cGCGA-CGGCCgCCUGgaCGGGGgcgUCCGAg -3'
miRNA:   3'- -CGUUgGCCGG-GGAUagGCUCC---AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 226481 0.67 0.881742
Target:  5'- -aGGCCGGggcccgggcgcuCCCCUcgCCGcGGGUCCu- -3'
miRNA:   3'- cgUUGGCC------------GGGGAuaGGC-UCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 204853 0.67 0.881742
Target:  5'- gGCggUCGGUCCUcg-UgGAGGUCCGc -3'
miRNA:   3'- -CGuuGGCCGGGGauaGgCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 154386 0.67 0.874979
Target:  5'- gGCGAaaguCCcGCCCCcGUCggaggcgauCGGGGUCCGAg -3'
miRNA:   3'- -CGUU----GGcCGGGGaUAG---------GCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 114421 0.67 0.874979
Target:  5'- uCGACCGGCUCCca--CGcGGUCCGc -3'
miRNA:   3'- cGUUGGCCGGGGauagGCuCCAGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.