miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 5' -58.6 NC_002512.2 + 228034 0.66 0.904618
Target:  5'- --gCGAccGGACGGCGGCGAGacgcccGCGGa -3'
miRNA:   3'- aggGCU--CCUGCUGCCGCUCau----CGCUa -5'
9175 5' -58.6 NC_002512.2 + 75779 0.66 0.904618
Target:  5'- gCCCG-GGAgGACGGgGcAG-AGCGGg -3'
miRNA:   3'- aGGGCuCCUgCUGCCgC-UCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 214428 0.66 0.90101
Target:  5'- gCCCGAGGAccgcguccccgucuaCGuCGGCGAGga-CGAg -3'
miRNA:   3'- aGGGCUCCU---------------GCuGCCGCUCaucGCUa -5'
9175 5' -58.6 NC_002512.2 + 144247 0.66 0.898562
Target:  5'- cCCCGuGGaaaguGCGGCGGC-AGcgGGCGAa -3'
miRNA:   3'- aGGGCuCC-----UGCUGCCGcUCa-UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 81831 0.66 0.898562
Target:  5'- cUCCgaGAGGACGACGaCGAGcgAGgGGa -3'
miRNA:   3'- -AGGg-CUCCUGCUGCcGCUCa-UCgCUa -5'
9175 5' -58.6 NC_002512.2 + 96207 0.66 0.894828
Target:  5'- gCCgCGAGGucggccacggcggccGCGGCGGCG-GcGGCGAc -3'
miRNA:   3'- aGG-GCUCC---------------UGCUGCCGCuCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 195128 0.66 0.892296
Target:  5'- aCCCGGGGGagaGGCGGUGuc--GCGAc -3'
miRNA:   3'- aGGGCUCCUg--CUGCCGCucauCGCUa -5'
9175 5' -58.6 NC_002512.2 + 223793 0.66 0.892296
Target:  5'- gUCgCCGGGGACGuCGGCG----GCGAc -3'
miRNA:   3'- -AG-GGCUCCUGCuGCCGCucauCGCUa -5'
9175 5' -58.6 NC_002512.2 + 112149 0.66 0.892296
Target:  5'- --aCGAGGcgguCGACGGCGAGccGGCGc- -3'
miRNA:   3'- aggGCUCCu---GCUGCCGCUCa-UCGCua -5'
9175 5' -58.6 NC_002512.2 + 161919 0.66 0.892296
Target:  5'- cUCCGGcGGACGccACGGCGAaccGgcGCGAc -3'
miRNA:   3'- aGGGCU-CCUGC--UGCCGCU---CauCGCUa -5'
9175 5' -58.6 NC_002512.2 + 184782 0.66 0.892296
Target:  5'- cCCCGAGGACGugGccCGGGccuccGCGGg -3'
miRNA:   3'- aGGGCUCCUGCugCc-GCUCau---CGCUa -5'
9175 5' -58.6 NC_002512.2 + 228405 0.66 0.885823
Target:  5'- gUCCgGGGGACGG-GGCGcuGGggGGCGGg -3'
miRNA:   3'- -AGGgCUCCUGCUgCCGC--UCa-UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 71557 0.66 0.885823
Target:  5'- aCCUGAGGACGACGaG-GAc-AGCGAc -3'
miRNA:   3'- aGGGCUCCUGCUGC-CgCUcaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 203264 0.66 0.885823
Target:  5'- aCCCGGuagcGGuuGAUGGCGAucagcaucagcGUGGCGAa -3'
miRNA:   3'- aGGGCU----CCugCUGCCGCU-----------CAUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 204710 0.66 0.885823
Target:  5'- --aCGucGGCGACGGCGGGcccggGGCGGg -3'
miRNA:   3'- aggGCucCUGCUGCCGCUCa----UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 118032 0.66 0.885823
Target:  5'- --aCGAGGACG-CGGCGAc-GGCGGc -3'
miRNA:   3'- aggGCUCCUGCuGCCGCUcaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 153110 0.66 0.879145
Target:  5'- aUCCG-GGACGAUucgguggcgacgGGCGGGacgGGCGAUc -3'
miRNA:   3'- aGGGCuCCUGCUG------------CCGCUCa--UCGCUA- -5'
9175 5' -58.6 NC_002512.2 + 196408 0.66 0.879145
Target:  5'- gCgCGGGGACG-CGGgGGGcGGCGGc -3'
miRNA:   3'- aGgGCUCCUGCuGCCgCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 116460 0.66 0.879145
Target:  5'- gCUCGGGGACGggGCGGUGAucccGGCGGc -3'
miRNA:   3'- aGGGCUCCUGC--UGCCGCUca--UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 213641 0.66 0.877102
Target:  5'- -gCCGcGGGCGACGGCGAcgacgacgaugacgGaGGCGGa -3'
miRNA:   3'- agGGCuCCUGCUGCCGCU--------------CaUCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.