miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 5' -57.3 NC_002512.2 + 198726 0.66 0.940249
Target:  5'- -aGGCGGuGCGUCucccGGGCCAgguccgcgaagACGGCCu -3'
miRNA:   3'- ucCCGCC-UGUAGu---CCUGGU-----------UGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 166472 0.66 0.940249
Target:  5'- gAGGGCggGGACggCGGGACC-GCGGg-- -3'
miRNA:   3'- -UCCCG--CCUGuaGUCCUGGuUGCUggc -5'
9177 5' -57.3 NC_002512.2 + 70640 0.66 0.940249
Target:  5'- --aGUGuGcCGUCAGGACCAuucACGACCu -3'
miRNA:   3'- uccCGC-CuGUAGUCCUGGU---UGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 133955 0.66 0.940249
Target:  5'- gAGGGCGcGAUcaagGUCaAGGACUuucCGAUCGa -3'
miRNA:   3'- -UCCCGC-CUG----UAG-UCCUGGuu-GCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 155893 0.66 0.93565
Target:  5'- -cGGCGGGCG-CGGGGacgaguCCGGCG-CCGa -3'
miRNA:   3'- ucCCGCCUGUaGUCCU------GGUUGCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 219219 0.66 0.93565
Target:  5'- cGGGCcGGCcucggcgagGUCGGGAUCGugcuCGGCCGc -3'
miRNA:   3'- uCCCGcCUG---------UAGUCCUGGUu---GCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 170821 0.66 0.93565
Target:  5'- gGGGGCGGcaGCGgcggCAGcGgCGGCGACCc -3'
miRNA:   3'- -UCCCGCC--UGUa---GUCcUgGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 121171 0.66 0.930831
Target:  5'- cAGGGCGaGGCGUUcucGGACgaCGACGACa- -3'
miRNA:   3'- -UCCCGC-CUGUAGu--CCUG--GUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 103298 0.66 0.930831
Target:  5'- gAGGaGcCGGcCGUCguAGGACagGACGGCCGa -3'
miRNA:   3'- -UCC-C-GCCuGUAG--UCCUGg-UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 192518 0.66 0.930831
Target:  5'- -cGGaGGACAUgGGGuCCGACGACg- -3'
miRNA:   3'- ucCCgCCUGUAgUCCuGGUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 195310 0.66 0.930831
Target:  5'- aAGGGCGcGAgcUCAGGugCGccuACGACa- -3'
miRNA:   3'- -UCCCGC-CUguAGUCCugGU---UGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 191660 0.66 0.930831
Target:  5'- -cGGCGGagacguccGCGUCccGGGGCUgGGCGACCGg -3'
miRNA:   3'- ucCCGCC--------UGUAG--UCCUGG-UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 229376 0.66 0.925793
Target:  5'- uGGGGCGGGagggggUAGGgggaaagaagGCCAACGGCgCGc -3'
miRNA:   3'- -UCCCGCCUgua---GUCC----------UGGUUGCUG-GC- -5'
9177 5' -57.3 NC_002512.2 + 137668 0.66 0.925793
Target:  5'- cGGGCGGccAUAUCGGuGAUCcccgucauAGCGGCCu -3'
miRNA:   3'- uCCCGCC--UGUAGUC-CUGG--------UUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 222906 0.66 0.920536
Target:  5'- gAGGGCuccugcgucuGGAgGcUCGgcccgcGGGCCAACGACCu -3'
miRNA:   3'- -UCCCG----------CCUgU-AGU------CCUGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 221847 0.66 0.920536
Target:  5'- gGGGGCGcc--UCGGGACCGG-GACCu -3'
miRNA:   3'- -UCCCGCcuguAGUCCUGGUUgCUGGc -5'
9177 5' -57.3 NC_002512.2 + 220874 0.66 0.920536
Target:  5'- cGGGGCcucGGcgcucucCAUCGuGGCCGACGACCu -3'
miRNA:   3'- -UCCCG---CCu------GUAGUcCUGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 157061 0.66 0.920536
Target:  5'- -aGGCGGGCGUCccGGGGuCCGGgGucGCCGg -3'
miRNA:   3'- ucCCGCCUGUAG--UCCU-GGUUgC--UGGC- -5'
9177 5' -57.3 NC_002512.2 + 94919 0.66 0.920536
Target:  5'- cGGGCaGACAgcUCcGGAUCAcgGCGAgCCGg -3'
miRNA:   3'- uCCCGcCUGU--AGuCCUGGU--UGCU-GGC- -5'
9177 5' -57.3 NC_002512.2 + 193624 0.66 0.920536
Target:  5'- uGGGGgGGAag--AGGAUCGACGccGCCGa -3'
miRNA:   3'- -UCCCgCCUguagUCCUGGUUGC--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.