miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 3' -61.1 NC_002512.2 + 222936 0.66 0.792004
Target:  5'- -cGGGCCaacgACCugGC-CGGCCucuaccGCUGCGu -3'
miRNA:   3'- ucCCCGG----UGGugUGuGCCGG------CGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 169067 0.66 0.792004
Target:  5'- gAGGGGCU-CCGCG-GCGGCgGCgucGCGg -3'
miRNA:   3'- -UCCCCGGuGGUGUgUGCCGgCGa--UGU- -5'
9178 3' -61.1 NC_002512.2 + 143733 0.66 0.792004
Target:  5'- -aGGGCC-UCGgAgGCGGCCGCgGCGu -3'
miRNA:   3'- ucCCCGGuGGUgUgUGCCGGCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 119345 0.66 0.783332
Target:  5'- cGGGGGCggaaaCGCCGguCACGGCgacuCGCUcGCGg -3'
miRNA:   3'- -UCCCCG-----GUGGUguGUGCCG----GCGA-UGU- -5'
9178 3' -61.1 NC_002512.2 + 132109 0.66 0.783332
Target:  5'- cGGGGCUcgaggGCCGCcCGguaGGCCGCgaGCAa -3'
miRNA:   3'- uCCCCGG-----UGGUGuGUg--CCGGCGa-UGU- -5'
9178 3' -61.1 NC_002512.2 + 191041 0.66 0.783332
Target:  5'- cGGGGCgCGgCGCACGuggacCGGUCGCgccugGCGc -3'
miRNA:   3'- uCCCCG-GUgGUGUGU-----GCCGGCGa----UGU- -5'
9178 3' -61.1 NC_002512.2 + 116955 0.66 0.774537
Target:  5'- cGGGGcGCCAuCCGCA-ACGaGCUGCUGa- -3'
miRNA:   3'- -UCCC-CGGU-GGUGUgUGC-CGGCGAUgu -5'
9178 3' -61.1 NC_002512.2 + 148831 0.66 0.774537
Target:  5'- uGGGGGCgGuCCGgGCGCa-CCGCUGCc -3'
miRNA:   3'- -UCCCCGgU-GGUgUGUGccGGCGAUGu -5'
9178 3' -61.1 NC_002512.2 + 91543 0.66 0.774537
Target:  5'- gAGGaGGaCCACCugGCGCugaccacGCCGCUcucGCGg -3'
miRNA:   3'- -UCC-CC-GGUGGugUGUGc------CGGCGA---UGU- -5'
9178 3' -61.1 NC_002512.2 + 152400 0.66 0.774537
Target:  5'- uGGGGGa-GCC-CACAgGGCgauCGCUGCGu -3'
miRNA:   3'- -UCCCCggUGGuGUGUgCCG---GCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 110696 0.66 0.765629
Target:  5'- ---aGCCGCCGCAgggcCAgGGCCaGCUGCAu -3'
miRNA:   3'- ucccCGGUGGUGU----GUgCCGG-CGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 76445 0.66 0.765629
Target:  5'- -cGGGCCAggUCuCGgaACGGCCGCUGCc -3'
miRNA:   3'- ucCCCGGU--GGuGUg-UGCCGGCGAUGu -5'
9178 3' -61.1 NC_002512.2 + 95751 0.66 0.765629
Target:  5'- cGGGacGCgCGCCGCG-ACGGCCGCcuggACGg -3'
miRNA:   3'- uCCC--CG-GUGGUGUgUGCCGGCGa---UGU- -5'
9178 3' -61.1 NC_002512.2 + 130655 0.66 0.764732
Target:  5'- cGGGG-CACCAgaugcgcacgaccCACACGGCgGCggccGCGg -3'
miRNA:   3'- uCCCCgGUGGU-------------GUGUGCCGgCGa---UGU- -5'
9178 3' -61.1 NC_002512.2 + 213225 0.66 0.756614
Target:  5'- cGGGucguGGCCGCCaacgGCGC-CGGCCGgauCUGCGu -3'
miRNA:   3'- -UCC----CCGGUGG----UGUGuGCCGGC---GAUGU- -5'
9178 3' -61.1 NC_002512.2 + 184893 0.66 0.756614
Target:  5'- cGGGGUCAgCGgGCgGCGGC-GCUACu -3'
miRNA:   3'- uCCCCGGUgGUgUG-UGCCGgCGAUGu -5'
9178 3' -61.1 NC_002512.2 + 208891 0.66 0.755707
Target:  5'- gAGGGGCCGggaauccCCGCGCGggaGGCUcCUAUAa -3'
miRNA:   3'- -UCCCCGGU-------GGUGUGUg--CCGGcGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 121145 0.66 0.7475
Target:  5'- cGGcGGCCGagACGC-CGGCCGCgGCc -3'
miRNA:   3'- uCC-CCGGUggUGUGuGCCGGCGaUGu -5'
9178 3' -61.1 NC_002512.2 + 121457 0.66 0.7475
Target:  5'- gAGGGGuCCGCCcCGCGCccGCCGCc--- -3'
miRNA:   3'- -UCCCC-GGUGGuGUGUGc-CGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 147567 0.67 0.738295
Target:  5'- cGGGGCgGCC---CGCGGCCcuCUACAc -3'
miRNA:   3'- uCCCCGgUGGuguGUGCCGGc-GAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.