miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9179 3' -53.3 NC_002512.2 + 161856 0.66 0.993854
Target:  5'- aCGGCGuCGGCgguccuccCGGGUcGGuGCGUCUCg -3'
miRNA:   3'- gGCCGC-GCCG--------GUUUAaCCuUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 153305 0.66 0.993854
Target:  5'- uCCGG-GuCGGCCGGuucccgcugGGGugGUUCCg -3'
miRNA:   3'- -GGCCgC-GCCGGUUuaa------CCUugUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 111800 0.66 0.993854
Target:  5'- gCGGuCGCcGCCGGcgccGGAGCcgCCCc -3'
miRNA:   3'- gGCC-GCGcCGGUUuaa-CCUUGuaGGG- -5'
9179 3' -53.3 NC_002512.2 + 123664 0.66 0.993854
Target:  5'- cCCGcGCGCGcGCCGccauggccgcgGAccGGAugAUCgCCa -3'
miRNA:   3'- -GGC-CGCGC-CGGU-----------UUaaCCUugUAG-GG- -5'
9179 3' -53.3 NC_002512.2 + 132453 0.66 0.992951
Target:  5'- cCCGGCgGCGGguCCGg---GGAGCGcgcgucucUCCCc -3'
miRNA:   3'- -GGCCG-CGCC--GGUuuaaCCUUGU--------AGGG- -5'
9179 3' -53.3 NC_002512.2 + 222657 0.66 0.992951
Target:  5'- aCGGC-CGGCCGGGccgaGGGGCGcCUCg -3'
miRNA:   3'- gGCCGcGCCGGUUUaa--CCUUGUaGGG- -5'
9179 3' -53.3 NC_002512.2 + 137725 0.66 0.992951
Target:  5'- gCCGGCGUucuCCAGGgacGAGCGUCCg -3'
miRNA:   3'- -GGCCGCGcc-GGUUUaacCUUGUAGGg -5'
9179 3' -53.3 NC_002512.2 + 104365 0.66 0.992951
Target:  5'- gCGGCaCGGCaaGAcgUGGuucacCAUCCCg -3'
miRNA:   3'- gGCCGcGCCGg-UUuaACCuu---GUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 201996 0.66 0.992951
Target:  5'- gCGGUGUGGCucgucucggaCAGGUggcGGGGCcggGUCCCc -3'
miRNA:   3'- gGCCGCGCCG----------GUUUAa--CCUUG---UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 196191 0.66 0.991946
Target:  5'- -gGGCGaCGGCCGGGUcccUGGcgAGCcUCCg -3'
miRNA:   3'- ggCCGC-GCCGGUUUA---ACC--UUGuAGGg -5'
9179 3' -53.3 NC_002512.2 + 92642 0.66 0.991946
Target:  5'- gCCGGCGCcgggacccGCgCGGAUccGGGACGgccgCCCg -3'
miRNA:   3'- -GGCCGCGc-------CG-GUUUAa-CCUUGUa---GGG- -5'
9179 3' -53.3 NC_002512.2 + 95698 0.66 0.991946
Target:  5'- uCCGGCGgggacggggGGCCGGGagGGGAagacggcucccCGUCCCc -3'
miRNA:   3'- -GGCCGCg--------CCGGUUUaaCCUU-----------GUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 108429 0.66 0.991946
Target:  5'- gCCGccCGgGGCCGGGggccGGGGgGUCCCu -3'
miRNA:   3'- -GGCc-GCgCCGGUUUaa--CCUUgUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 211373 0.66 0.991946
Target:  5'- cCCGGCGCGGCaugcugcggaaGAAgaGGcGCAaCCg -3'
miRNA:   3'- -GGCCGCGCCGg----------UUUaaCCuUGUaGGg -5'
9179 3' -53.3 NC_002512.2 + 163653 0.66 0.991623
Target:  5'- aCGG-GCGGCCcgucaccgccagcuGGccgGGGACGUCCUc -3'
miRNA:   3'- gGCCgCGCCGG--------------UUuaaCCUUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 129554 0.66 0.99129
Target:  5'- gCCGGCGCccGCCAGucccgaggcgccGGGACGUcggcCCCg -3'
miRNA:   3'- -GGCCGCGc-CGGUUuaa---------CCUUGUA----GGG- -5'
9179 3' -53.3 NC_002512.2 + 211978 0.66 0.991062
Target:  5'- -aGGaCGCGGCCGucguccucgGGGccgccgccgccuaucACGUCCCc -3'
miRNA:   3'- ggCC-GCGCCGGUuuaa-----CCU---------------UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 219614 0.66 0.99083
Target:  5'- cCCGGCuucuCGGgCAuc--GGggUGUCCCg -3'
miRNA:   3'- -GGCCGc---GCCgGUuuaaCCuuGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 208670 0.66 0.99083
Target:  5'- cCCGG-GCGGCgucccgGGGGCcgcuGUCCCu -3'
miRNA:   3'- -GGCCgCGCCGguuuaaCCUUG----UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 114122 0.66 0.99083
Target:  5'- aCGGCaCGGCCAccGGUccgaGGAGCAgCCg -3'
miRNA:   3'- gGCCGcGCCGGU--UUAa---CCUUGUaGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.