miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9180 3' -52.4 NC_002512.2 + 225290 0.66 0.995046
Target:  5'- uCCGUCucGCGGCccg-CGGCGCcGCc -3'
miRNA:   3'- cGGCAGcuCGUCGuuaaGCCGUGuUG- -5'
9180 3' -52.4 NC_002512.2 + 186713 0.66 0.995046
Target:  5'- uGCgG-CGGGUugGGCGAggagUCGGC-CAACg -3'
miRNA:   3'- -CGgCaGCUCG--UCGUUa---AGCCGuGUUG- -5'
9180 3' -52.4 NC_002512.2 + 116977 0.66 0.995046
Target:  5'- uGCUGaUCGAGCugguccGCGAcgCGGCGacCGACg -3'
miRNA:   3'- -CGGC-AGCUCGu-----CGUUaaGCCGU--GUUG- -5'
9180 3' -52.4 NC_002512.2 + 35926 0.66 0.995046
Target:  5'- cGCCauGUCGgaguGGCGGCAuggaacgaUCGGUACGAg -3'
miRNA:   3'- -CGG--CAGC----UCGUCGUua------AGCCGUGUUg -5'
9180 3' -52.4 NC_002512.2 + 148203 0.66 0.995046
Target:  5'- gGCCGcCGAGCuGCGGgcgcUCauGUACGACa -3'
miRNA:   3'- -CGGCaGCUCGuCGUUa---AGc-CGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 188667 0.66 0.994973
Target:  5'- cCCGUCGuccgaccGCGGCGGUcUCGGggacgauCACGGCg -3'
miRNA:   3'- cGGCAGCu------CGUCGUUA-AGCC-------GUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 97645 0.66 0.994268
Target:  5'- -aCGUaCGAGCGGCugaacgcguccgAGUUCGcGCGgGACa -3'
miRNA:   3'- cgGCA-GCUCGUCG------------UUAAGC-CGUgUUG- -5'
9180 3' -52.4 NC_002512.2 + 123804 0.66 0.994268
Target:  5'- gGCUGaaGAGCGGCcugUCGGUgGCGACc -3'
miRNA:   3'- -CGGCagCUCGUCGuuaAGCCG-UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 149698 0.66 0.994268
Target:  5'- cGCgGaCGAcaGCAGCAg--CGGCAgCAGCg -3'
miRNA:   3'- -CGgCaGCU--CGUCGUuaaGCCGU-GUUG- -5'
9180 3' -52.4 NC_002512.2 + 148081 0.66 0.994268
Target:  5'- cGCgGUCGuccgucccccGGCGGCGGcggCGGCGCcgaaGACg -3'
miRNA:   3'- -CGgCAGC----------UCGUCGUUaa-GCCGUG----UUG- -5'
9180 3' -52.4 NC_002512.2 + 189537 0.66 0.994268
Target:  5'- cGCgGUCGGcguccGCGGCAucugcUGGUGCGACg -3'
miRNA:   3'- -CGgCAGCU-----CGUCGUuaa--GCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 213969 0.66 0.994101
Target:  5'- uCCGUCGGGCaccuggauaucuguGGCuuucucgaagggUGGCGCGACg -3'
miRNA:   3'- cGGCAGCUCG--------------UCGuuaa--------GCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 195832 0.66 0.993394
Target:  5'- cGCCGUCGuGgGGCAcgccUCGaGCAacCGGCg -3'
miRNA:   3'- -CGGCAGCuCgUCGUua--AGC-CGU--GUUG- -5'
9180 3' -52.4 NC_002512.2 + 184986 0.66 0.993301
Target:  5'- gGCCGUCGAcGUggAGCGcugCGGCccggugccgcuguACAGCg -3'
miRNA:   3'- -CGGCAGCU-CG--UCGUuaaGCCG-------------UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 153413 0.66 0.992417
Target:  5'- gGCgGUCGAgguggcggaaugGCGGCAGgccggccgGGCGCGGCu -3'
miRNA:   3'- -CGgCAGCU------------CGUCGUUaag-----CCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 201208 0.66 0.991327
Target:  5'- aGCuCGUCGcGCAGguAgUUGGC-CAACc -3'
miRNA:   3'- -CG-GCAGCuCGUCguUaAGCCGuGUUG- -5'
9180 3' -52.4 NC_002512.2 + 161352 0.66 0.991327
Target:  5'- cCCGUCGAGCuguugccGCAccUgGGC-CAGCa -3'
miRNA:   3'- cGGCAGCUCGu------CGUuaAgCCGuGUUG- -5'
9180 3' -52.4 NC_002512.2 + 133571 0.66 0.990118
Target:  5'- cCUGUCGuGCGGCGAc-CGGCccgcccGCGGCg -3'
miRNA:   3'- cGGCAGCuCGUCGUUaaGCCG------UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 120899 0.66 0.990118
Target:  5'- cGCCGaCGAGCAGguAcaCGGCcCuGCu -3'
miRNA:   3'- -CGGCaGCUCGUCguUaaGCCGuGuUG- -5'
9180 3' -52.4 NC_002512.2 + 101420 0.66 0.990118
Target:  5'- uCCGagGgcacAGCGGCGGccggCGGCGCGGCg -3'
miRNA:   3'- cGGCagC----UCGUCGUUaa--GCCGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.