miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9182 5' -50.6 NC_002512.2 + 181223 0.66 0.99891
Target:  5'- cGUGGAccACCGCguugCGGAucaCCGAGuacAGCa -3'
miRNA:   3'- -UACCU--UGGUGaua-GCCU---GGCUCu--UUG- -5'
9182 5' -50.6 NC_002512.2 + 205302 0.66 0.99891
Target:  5'- -cGGuccCCGCgucgaCGGACCGGGAGGg -3'
miRNA:   3'- uaCCuu-GGUGaua--GCCUGGCUCUUUg -5'
9182 5' -50.6 NC_002512.2 + 26512 0.66 0.99891
Target:  5'- cUGGAauGCCGCcgAUCGuuuCCGAGGAAg -3'
miRNA:   3'- uACCU--UGGUGa-UAGCcu-GGCUCUUUg -5'
9182 5' -50.6 NC_002512.2 + 148471 0.66 0.998682
Target:  5'- -cGGAGCCGCgacggCGGGgaggaCGAGAAGg -3'
miRNA:   3'- uaCCUUGGUGaua--GCCUg----GCUCUUUg -5'
9182 5' -50.6 NC_002512.2 + 35427 0.66 0.998682
Target:  5'- -cGaGGACCACUcgCGuuCCaGAGAAACu -3'
miRNA:   3'- uaC-CUUGGUGAuaGCcuGG-CUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 120616 0.66 0.998414
Target:  5'- -cGGGAUCACgAUCaccuGuCCGAGAAACg -3'
miRNA:   3'- uaCCUUGGUGaUAGc---CuGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 96523 0.66 0.998414
Target:  5'- -gGGAGCCGCgccggCGGugUGAgccGggGCc -3'
miRNA:   3'- uaCCUUGGUGaua--GCCugGCU---CuuUG- -5'
9182 5' -50.6 NC_002512.2 + 100113 0.66 0.998067
Target:  5'- -aGGGGCCGacguccagguccuCUAggCGGACCaGGAGGCa -3'
miRNA:   3'- uaCCUUGGU-------------GAUa-GCCUGGcUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 213215 0.66 0.997738
Target:  5'- cUGGGACCGCcggGUCGuGGCCGcc-AACg -3'
miRNA:   3'- uACCUUGGUGa--UAGC-CUGGCucuUUG- -5'
9182 5' -50.6 NC_002512.2 + 228263 0.66 0.997738
Target:  5'- -gGGGGCgACUGaccgCGGACCGGGugggagagggaGGACg -3'
miRNA:   3'- uaCCUUGgUGAUa---GCCUGGCUC-----------UUUG- -5'
9182 5' -50.6 NC_002512.2 + 145513 0.66 0.997738
Target:  5'- -cGGGGCUGCUccggcucugcgcGUCGGGCCGG--AGCa -3'
miRNA:   3'- uaCCUUGGUGA------------UAGCCUGGCUcuUUG- -5'
9182 5' -50.6 NC_002512.2 + 206168 0.66 0.997738
Target:  5'- uGUGGAACCGCgucUCGucCUGGGgcACg -3'
miRNA:   3'- -UACCUUGGUGau-AGCcuGGCUCuuUG- -5'
9182 5' -50.6 NC_002512.2 + 224116 0.66 0.997318
Target:  5'- cGUGGuGACCAUc-UCGGccguggacccgcGCCGGGAGGCg -3'
miRNA:   3'- -UACC-UUGGUGauAGCC------------UGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 195740 0.66 0.997318
Target:  5'- -gGGAACCGCUccgaggucGUCGG-CCGgauccuGGGGACc -3'
miRNA:   3'- uaCCUUGGUGA--------UAGCCuGGC------UCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 123146 0.66 0.997318
Target:  5'- -cGGAgcGCCGCcg--GGGCCGAGGAGg -3'
miRNA:   3'- uaCCU--UGGUGauagCCUGGCUCUUUg -5'
9182 5' -50.6 NC_002512.2 + 149010 0.67 0.995657
Target:  5'- -gGGGGCCGCcg-CGGACCGcccGACa -3'
miRNA:   3'- uaCCUUGGUGauaGCCUGGCucuUUG- -5'
9182 5' -50.6 NC_002512.2 + 115705 0.67 0.995657
Target:  5'- gGUGGAgaACaagaucaaGCUGUCGGaggcgGCCGAGAcGACg -3'
miRNA:   3'- -UACCU--UGg-------UGAUAGCC-----UGGCUCU-UUG- -5'
9182 5' -50.6 NC_002512.2 + 229084 0.67 0.995657
Target:  5'- -aGGAGacCCAUUAUCgGGGCgGAGAGGa -3'
miRNA:   3'- uaCCUU--GGUGAUAG-CCUGgCUCUUUg -5'
9182 5' -50.6 NC_002512.2 + 147043 0.67 0.995657
Target:  5'- cUGGAcCUGCgcgCGGACCGGGGcgggAACg -3'
miRNA:   3'- uACCUuGGUGauaGCCUGGCUCU----UUG- -5'
9182 5' -50.6 NC_002512.2 + 136451 0.67 0.994945
Target:  5'- -cGGGGCCACUAcaucCGcGCCGAGuacGACg -3'
miRNA:   3'- uaCCUUGGUGAUa---GCcUGGCUCu--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.