miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9183 3' -61.2 NC_002512.2 + 115451 0.66 0.820465
Target:  5'- uUCGCCGaucacgcgaaCCGGCUg--GCGcagagcUCGCAGGCc -3'
miRNA:   3'- -AGCGGC----------GGCUGAggaCGC------AGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 115358 0.66 0.820465
Target:  5'- aUCGgCGUgaaGACgCCgGCGUCGUAcGGCa -3'
miRNA:   3'- -AGCgGCGg--CUGaGGaCGCAGCGU-CCG- -5'
9183 3' -61.2 NC_002512.2 + 5810 0.66 0.820465
Target:  5'- cCGCCGCCGcC-CCguucggcgGCGUCGaaauGGUc -3'
miRNA:   3'- aGCGGCGGCuGaGGa-------CGCAGCgu--CCG- -5'
9183 3' -61.2 NC_002512.2 + 128829 0.66 0.820465
Target:  5'- gCGCUGUCGGCgcagcugcaCCgcucggGCGccgCGCGGGCc -3'
miRNA:   3'- aGCGGCGGCUGa--------GGa-----CGCa--GCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 217302 0.66 0.820465
Target:  5'- gCGCCGggagaugaUCGGCUCCgccaGCGUCuGCAgcacguacGGCg -3'
miRNA:   3'- aGCGGC--------GGCUGAGGa---CGCAG-CGU--------CCG- -5'
9183 3' -61.2 NC_002512.2 + 77091 0.66 0.81237
Target:  5'- gUCGCCGCgGAcCUCCga-GaCGgAGGCc -3'
miRNA:   3'- -AGCGGCGgCU-GAGGacgCaGCgUCCG- -5'
9183 3' -61.2 NC_002512.2 + 203546 0.66 0.81237
Target:  5'- uUCaCCGCCGuCUCC-GCGUcccucgccacCGaCAGGCc -3'
miRNA:   3'- -AGcGGCGGCuGAGGaCGCA----------GC-GUCCG- -5'
9183 3' -61.2 NC_002512.2 + 115080 0.66 0.81237
Target:  5'- aCGUCGCgCGGCgCCUggccacccGCGUgcaGCGGGCc -3'
miRNA:   3'- aGCGGCG-GCUGaGGA--------CGCAg--CGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 196628 0.66 0.80413
Target:  5'- uUCGCCcgggugGCCGACgCCgUGUGUCugGgGGGCc -3'
miRNA:   3'- -AGCGG------CGGCUGaGG-ACGCAG--CgUCCG- -5'
9183 3' -61.2 NC_002512.2 + 103375 0.66 0.80413
Target:  5'- -gGCCGCCGGagccgCCgagGCGcUCGCgcuccgGGGCc -3'
miRNA:   3'- agCGGCGGCUga---GGa--CGC-AGCG------UCCG- -5'
9183 3' -61.2 NC_002512.2 + 191017 0.66 0.80413
Target:  5'- gCGCgGaCCGAggugCCUGCGagGCGGGg -3'
miRNA:   3'- aGCGgC-GGCUga--GGACGCagCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 76845 0.66 0.80413
Target:  5'- aCGCgGCCGACg---GCGuUCGaguaGGGCg -3'
miRNA:   3'- aGCGgCGGCUGaggaCGC-AGCg---UCCG- -5'
9183 3' -61.2 NC_002512.2 + 164597 0.66 0.80413
Target:  5'- aCGCgGCgGcgauGCUCaggGCGUUGCAGGa -3'
miRNA:   3'- aGCGgCGgC----UGAGga-CGCAGCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 217608 0.66 0.80413
Target:  5'- gUCGUCGgCGACUCggGCGgCGCcacGGGUc -3'
miRNA:   3'- -AGCGGCgGCUGAGgaCGCaGCG---UCCG- -5'
9183 3' -61.2 NC_002512.2 + 75073 0.66 0.80413
Target:  5'- cCGCCGCCG-CUgCCUcCGUCGCu--- -3'
miRNA:   3'- aGCGGCGGCuGA-GGAcGCAGCGuccg -5'
9183 3' -61.2 NC_002512.2 + 209106 0.66 0.803299
Target:  5'- gUCGUCaccCCGugUCCcgacguccgggacUGCGUCGUGGGa -3'
miRNA:   3'- -AGCGGc--GGCugAGG-------------ACGCAGCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 212106 0.66 0.795755
Target:  5'- cUCGCCGaguuccaCGGCgagaagcuggUCCccuaucaccugUGCGUCGgCGGGCa -3'
miRNA:   3'- -AGCGGCg------GCUG----------AGG-----------ACGCAGC-GUCCG- -5'
9183 3' -61.2 NC_002512.2 + 218944 0.66 0.795755
Target:  5'- gCGCCggcguccucGUCGACcCCUcCGUCGCcGGCu -3'
miRNA:   3'- aGCGG---------CGGCUGaGGAcGCAGCGuCCG- -5'
9183 3' -61.2 NC_002512.2 + 166435 0.66 0.795755
Target:  5'- uUCcCCGCCGucCUCCggggGCGacggCGcCGGGCu -3'
miRNA:   3'- -AGcGGCGGCu-GAGGa---CGCa---GC-GUCCG- -5'
9183 3' -61.2 NC_002512.2 + 131330 0.66 0.795755
Target:  5'- gCGcCCGCCGGaUCC-GCGgaaCGcCGGGCg -3'
miRNA:   3'- aGC-GGCGGCUgAGGaCGCa--GC-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.