miRNA display CGI


Results 1 - 20 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 38449 0.66 0.524874
Target:  5'- cCCCGGGCggagUgaacaugacugucccGCCCgGGCCGCCa-CGGCg -3'
miRNA:   3'- -GGGUCCG----G---------------UGGG-CCGGCGGgcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 38722 0.66 0.516161
Target:  5'- gCCguGGCgGCCCgggcgGGacagucauguucacuCCGCCCGgGGCg -3'
miRNA:   3'- -GGguCCGgUGGG-----CC---------------GGCGGGCgCCGg -5'
9186 3' -68.4 NC_002512.2 + 71237 0.66 0.512693
Target:  5'- uCCCGuccucggucgcGGCCGaguaCGGCuucggcgggggCGCCgGCGGCCu -3'
miRNA:   3'- -GGGU-----------CCGGUgg--GCCG-----------GCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 73061 0.66 0.512693
Target:  5'- uCCgGGGUCGC-CGG-CGCCCaCGGCg -3'
miRNA:   3'- -GGgUCCGGUGgGCCgGCGGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 73452 0.66 0.512693
Target:  5'- gCCCu-GCCACCUGGCCuacuUCUGCGGgaCCu -3'
miRNA:   3'- -GGGucCGGUGGGCCGGc---GGGCGCC--GG- -5'
9186 3' -68.4 NC_002512.2 + 95077 0.66 0.512693
Target:  5'- gCCCcuGCCugUCGGgCGCCCGgaaGGaCUa -3'
miRNA:   3'- -GGGucCGGugGGCCgGCGGGCg--CC-GG- -5'
9186 3' -68.4 NC_002512.2 + 106395 0.66 0.512693
Target:  5'- aCCCAGugcugaaccugaGCCugacgaacgGCCCGGuguuCCGCCCG-GGCg -3'
miRNA:   3'- -GGGUC------------CGG---------UGGGCC----GGCGGGCgCCGg -5'
9186 3' -68.4 NC_002512.2 + 118790 0.66 0.512693
Target:  5'- uCCCGGGCgCGCacgaGGaCGaCCCGgGGCUc -3'
miRNA:   3'- -GGGUCCG-GUGgg--CCgGC-GGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 125269 0.66 0.512693
Target:  5'- aCCUcGGCC-CCgCGGgCGUCCcUGGCCc -3'
miRNA:   3'- -GGGuCCGGuGG-GCCgGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 152114 0.66 0.521382
Target:  5'- gCCCAcGaGUCAUCCGGUCGCguguccgacaCGCGGgCa -3'
miRNA:   3'- -GGGU-C-CGGUGGGCCGGCGg---------GCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 107015 0.66 0.521382
Target:  5'- gCCgCGGGCCGagagCCGGaCGCggagcgccgCCGgGGCCg -3'
miRNA:   3'- -GG-GUCCGGUg---GGCCgGCG---------GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 85110 0.66 0.521382
Target:  5'- gCCCGGGCgCGCaa---CGCCCGggaCGGCCg -3'
miRNA:   3'- -GGGUCCG-GUGggccgGCGGGC---GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 42424 0.66 0.521382
Target:  5'- aCCCuGGCUuUCCGGCUcaagGCCUacaaGGCCg -3'
miRNA:   3'- -GGGuCCGGuGGGCCGG----CGGGcg--CCGG- -5'
9186 3' -68.4 NC_002512.2 + 86981 0.66 0.521382
Target:  5'- aUCgAGGuCCGgUUGGCCGCCCucucguaguGCGcGCCc -3'
miRNA:   3'- -GGgUCC-GGUgGGCCGGCGGG---------CGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 106499 0.66 0.521382
Target:  5'- uCCCGGGgagagcgCGCCgCGGuucCCGCgCGCGcGCCg -3'
miRNA:   3'- -GGGUCCg------GUGG-GCC---GGCGgGCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 109207 0.66 0.521382
Target:  5'- aCCCGGGCgACCCGaCgGgCaaggGCGGCg -3'
miRNA:   3'- -GGGUCCGgUGGGCcGgCgGg---CGCCGg -5'
9186 3' -68.4 NC_002512.2 + 18945 0.66 0.521382
Target:  5'- gCUCGGGgUGCCC-GCCGCCCaCGaGCUc -3'
miRNA:   3'- -GGGUCCgGUGGGcCGGCGGGcGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 19616 0.66 0.521382
Target:  5'- gCgAGGCCG-CCGaGCC-CCCGaCGGUCc -3'
miRNA:   3'- gGgUCCGGUgGGC-CGGcGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 29995 0.66 0.521382
Target:  5'- gCCGGGCC-CCCucgcgcGCCGCCa-CGGUa -3'
miRNA:   3'- gGGUCCGGuGGGc-----CGGCGGgcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 47267 0.66 0.521382
Target:  5'- gCCCA-GCaGCUCcGCCGCCagcaagaaGCGGCCc -3'
miRNA:   3'- -GGGUcCGgUGGGcCGGCGGg-------CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.