miRNA display CGI


Results 1 - 20 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 192 0.69 0.327776
Target:  5'- gCgUGGGCUGCCCuGGCCcCCCGuCGcGCCg -3'
miRNA:   3'- -GgGUCCGGUGGG-CCGGcGGGC-GC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 341 0.68 0.40624
Target:  5'- gCCGGcGCCccGCCCGGCU-CCC-CGGCg -3'
miRNA:   3'- gGGUC-CGG--UGGGCCGGcGGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 1299 0.68 0.391119
Target:  5'- gUCCGGcGCCugCC-GCCGacacgaCCGCGGUa -3'
miRNA:   3'- -GGGUC-CGGugGGcCGGCg-----GGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 1598 0.66 0.490389
Target:  5'- cCCCGGGuCCcguccucccucucccACCCGGU---CCGCGGUCa -3'
miRNA:   3'- -GGGUCC-GG---------------UGGGCCGgcgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 1663 0.72 0.210474
Target:  5'- gCCCuucccGCCgucucGCCCGGCCucgaCCGCGGCCu -3'
miRNA:   3'- -GGGuc---CGG-----UGGGCCGGcg--GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 1831 0.69 0.327776
Target:  5'- uCCCGcGCCGCa--GCCGUCCGCGGgCg -3'
miRNA:   3'- -GGGUcCGGUGggcCGGCGGGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 1900 0.68 0.383698
Target:  5'- cUCC-GGCC-CUCGGCCcucgGCgCCGgGGCCc -3'
miRNA:   3'- -GGGuCCGGuGGGCCGG----CG-GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 2192 0.73 0.19271
Target:  5'- gCCCccGCCGCCgucgucgucuCGGUCGCCgGCGGCg -3'
miRNA:   3'- -GGGucCGGUGG----------GCCGGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 2247 0.74 0.160731
Target:  5'- aCCCGGGCgcuccguCGCCUGaccucgccgccGCCGCCCGCccuccGGCCg -3'
miRNA:   3'- -GGGUCCG-------GUGGGC-----------CGGCGGGCG-----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 2254 0.67 0.453723
Target:  5'- gCUCAGGCgACgCgGGCgaGUCCGaGGCCg -3'
miRNA:   3'- -GGGUCCGgUG-GgCCGg-CGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 2307 0.66 0.486998
Target:  5'- gCgGGGCUcugcuGCgCCGGCgGUCCGgaGGCCu -3'
miRNA:   3'- gGgUCCGG-----UG-GGCCGgCGGGCg-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 2389 0.74 0.153956
Target:  5'- cCCCGGGUCgcggcgucuccuACcuccucgcggCCGGCCGCCCcCGGCCu -3'
miRNA:   3'- -GGGUCCGG------------UG----------GGCCGGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 2442 0.69 0.354962
Target:  5'- cCCCggcagcgcgaAGGUgACCgCGGCCcgcGCCCGCGcGCg -3'
miRNA:   3'- -GGG----------UCCGgUGG-GCCGG---CGGGCGC-CGg -5'
9186 3' -68.4 NC_002512.2 + 2491 0.68 0.383698
Target:  5'- gUCCGGGCgGCCuuggggaaCGGaucucccccgaCGCCgGCGGCCc -3'
miRNA:   3'- -GGGUCCGgUGG--------GCCg----------GCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 2574 0.7 0.27812
Target:  5'- aCCgAGGCC-UCCGGaCCGCCgGCGcagcagagccccGCCa -3'
miRNA:   3'- -GGgUCCGGuGGGCC-GGCGGgCGC------------CGG- -5'
9186 3' -68.4 NC_002512.2 + 2671 0.67 0.437555
Target:  5'- uCCCGGuccGCCGCCUccuGGuCCGCgCGCGGg- -3'
miRNA:   3'- -GGGUC---CGGUGGG---CC-GGCGgGCGCCgg -5'
9186 3' -68.4 NC_002512.2 + 2737 0.76 0.116857
Target:  5'- cCCCaAGGCCGCCCGGaccuacucUCGCgCGCGGgCg -3'
miRNA:   3'- -GGG-UCCGGUGGGCC--------GGCGgGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 2783 0.67 0.421722
Target:  5'- cCCCGucuGaGCCcgACCCGGCCG---GCGGCCg -3'
miRNA:   3'- -GGGU---C-CGG--UGGGCCGGCgggCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 2977 0.69 0.327776
Target:  5'- uCgCGGGCCucCuuGGCC-CCCGCguGGCCc -3'
miRNA:   3'- -GgGUCCGGu-GggCCGGcGGGCG--CCGG- -5'
9186 3' -68.4 NC_002512.2 + 3009 0.8 0.06176
Target:  5'- uCCCGGGCCuuCCUGGCCuCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGu-GGGCCGGcGGGCgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.