miRNA display CGI


Results 1 - 20 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 4080 1.1 0.000401
Target:  5'- uCCCAGGCCACCCGGCCGCCCGCGGCCc -3'
miRNA:   3'- -GGGUCCGGUGGGCCGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 139217 0.88 0.017906
Target:  5'- gCCCuGGCCGCCgCGGCCGCcgacuccgagaCCGCGGCCg -3'
miRNA:   3'- -GGGuCCGGUGG-GCCGGCG-----------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 15908 0.83 0.036242
Target:  5'- gUCAGGCgGCUCGucggcucGCCGCCCGCGGCCg -3'
miRNA:   3'- gGGUCCGgUGGGC-------CGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 72728 0.83 0.04101
Target:  5'- gCCCAcGCCGCCCGGCCcgccGCCCGCcccgGGCCc -3'
miRNA:   3'- -GGGUcCGGUGGGCCGG----CGGGCG----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 133675 0.82 0.048567
Target:  5'- gCCGcGGCCGCCgUGGCCGaCCuCGCGGCCg -3'
miRNA:   3'- gGGU-CCGGUGG-GCCGGC-GG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 57263 0.81 0.050843
Target:  5'- cCCCGGucagaccGCCgACCCGGCCGCCCaCGGCUg -3'
miRNA:   3'- -GGGUC-------CGG-UGGGCCGGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 80993 0.81 0.056111
Target:  5'- aCCCGGGaCCGCCgCGgggccgguGCCGCCCGCgGGCCc -3'
miRNA:   3'- -GGGUCC-GGUGG-GC--------CGGCGGGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 69049 0.81 0.056111
Target:  5'- gCCCAGcGCCG-CCGGCCGCCCGCcuGCUg -3'
miRNA:   3'- -GGGUC-CGGUgGGCCGGCGGGCGc-CGG- -5'
9186 3' -68.4 NC_002512.2 + 119223 0.8 0.060298
Target:  5'- aCCAGGa---CCGGCUGCCCGCGGUCg -3'
miRNA:   3'- gGGUCCggugGGCCGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7690 0.8 0.061612
Target:  5'- cCCCGGGCCGCggccaaccucgcgCCGGCC-CUCGCGGUCg -3'
miRNA:   3'- -GGGUCCGGUG-------------GGCCGGcGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3009 0.8 0.06176
Target:  5'- uCCCGGGCCuuCCUGGCCuCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGu-GGGCCGGcGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 57302 0.8 0.063256
Target:  5'- gCCCGGcGCCcCCCGGUCGUCggaCGCGGCCu -3'
miRNA:   3'- -GGGUC-CGGuGGGCCGGCGG---GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3072 0.8 0.064786
Target:  5'- gUCCGGGCCcgcGCCCGcGCCGgguCCCGCcGGCCg -3'
miRNA:   3'- -GGGUCCGG---UGGGC-CGGC---GGGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 103762 0.8 0.064786
Target:  5'- cCUCuGGCCGCCCGGgagagCGCCCGgGGCCc -3'
miRNA:   3'- -GGGuCCGGUGGGCCg----GCGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3143 0.79 0.071275
Target:  5'- gUCC-GGCCggaGCCCGGUcccgccgucguCGCCCGCGGCCu -3'
miRNA:   3'- -GGGuCCGG---UGGGCCG-----------GCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 39193 0.79 0.071275
Target:  5'- aCCCGGGCgCACgCGGgCGCCCgccgcgGCGGCCc -3'
miRNA:   3'- -GGGUCCG-GUGgGCCgGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 40614 0.79 0.071275
Target:  5'- gCCCGGGCuCGCCgCGGUcggCGUCCGCGGCa -3'
miRNA:   3'- -GGGUCCG-GUGG-GCCG---GCGGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 135235 0.79 0.074749
Target:  5'- cCCCGGGCCGCCUcgaGGCCGUcguCCGC-GCCg -3'
miRNA:   3'- -GGGUCCGGUGGG---CCGGCG---GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 82588 0.79 0.074749
Target:  5'- gCCCAccGCUACCCgccggGGCgGCCCGCGGCCc -3'
miRNA:   3'- -GGGUc-CGGUGGG-----CCGgCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 70735 0.79 0.076546
Target:  5'- aCgGGaGCgCGCCCGGCCGCCUcacuuggaGCGGCCg -3'
miRNA:   3'- gGgUC-CG-GUGGGCCGGCGGG--------CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.