Results 21 - 40 of 736 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9186 | 3' | -68.4 | NC_002512.2 | + | 12376 | 0.78 | 0.08219 |
Target: 5'- cCCCGGGCCcguCCCcGUCGCCgggguCGCGGCCg -3' miRNA: 3'- -GGGUCCGGu--GGGcCGGCGG-----GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 130411 | 0.78 | 0.086171 |
Target: 5'- uCgCGGGCCgGCCCGccGCCGggcCCCGCGGCCg -3' miRNA: 3'- -GgGUCCGG-UGGGC--CGGC---GGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 102137 | 0.78 | 0.086172 |
Target: 5'- aCCCuGGCCGuCUaCGGCCGCgaCCGCGGCUg -3' miRNA: 3'- -GGGuCCGGU-GG-GCCGGCG--GGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 9578 | 0.78 | 0.092489 |
Target: 5'- gCCC-GGCC-CCCGGCCcCCCGgCGGCUc -3' miRNA: 3'- -GGGuCCGGuGGGCCGGcGGGC-GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 118657 | 0.77 | 0.094691 |
Target: 5'- cUCCGGG-CGCCCGGCCGCCCGUcaucGUCu -3' miRNA: 3'- -GGGUCCgGUGGGCCGGCGGGCGc---CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 38921 | 0.77 | 0.099244 |
Target: 5'- gCCCggagGGGCCGCCgCGGCgggCGCCCGCGuGCg -3' miRNA: 3'- -GGG----UCCGGUGG-GCCG---GCGGGCGC-CGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 7624 | 0.77 | 0.101597 |
Target: 5'- gCCuGGCCGCCCgccgcGGCCGCCguCGCGGUg -3' miRNA: 3'- gGGuCCGGUGGG-----CCGGCGG--GCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 91190 | 0.77 | 0.101597 |
Target: 5'- aCCAcgacggcggcGGCCGCgCCGGCCccGUUCGCGGCCg -3' miRNA: 3'- gGGU----------CCGGUG-GGCCGG--CGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 61001 | 0.77 | 0.101597 |
Target: 5'- cUCCucGuCCGCCCGGCCG-CCGCGGUCg -3' miRNA: 3'- -GGGucC-GGUGGGCCGGCgGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 31910 | 0.77 | 0.104003 |
Target: 5'- aCCAcGGCCgcGCCCGcGCCGUCCGggaCGGCCu -3' miRNA: 3'- gGGU-CCGG--UGGGC-CGGCGGGC---GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 96554 | 0.77 | 0.104003 |
Target: 5'- aCCGGcCCGCCCgcggcGGCgGCCCGCGGCa -3' miRNA: 3'- gGGUCcGGUGGG-----CCGgCGGGCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 91993 | 0.77 | 0.104003 |
Target: 5'- gUCCGGGUCuCCCGcGUCGCCgGCGGCg -3' miRNA: 3'- -GGGUCCGGuGGGC-CGGCGGgCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 41506 | 0.77 | 0.106463 |
Target: 5'- gCUCGGGCCGCaaGGgCGCCgGCGGCg -3' miRNA: 3'- -GGGUCCGGUGggCCgGCGGgCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 129080 | 0.77 | 0.106463 |
Target: 5'- uCCCcGGCgaACCCGGCgucgagggccCGCCCGCGGaCCa -3' miRNA: 3'- -GGGuCCGg-UGGGCCG----------GCGGGCGCC-GG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 134501 | 0.77 | 0.108977 |
Target: 5'- gCCaggGGGCgGCUCGGCCGCCCcCGGCa -3' miRNA: 3'- -GGg--UCCGgUGGGCCGGCGGGcGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 121433 | 0.77 | 0.108977 |
Target: 5'- aCCCGGcGCCGCCCGGggagggaccccCCgGCCCcCGGCCc -3' miRNA: 3'- -GGGUC-CGGUGGGCC-----------GG-CGGGcGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 137622 | 0.76 | 0.111287 |
Target: 5'- uUCCGGGagaccgcgcggauCUACCCGGCCGCggcggCCGCGGCg -3' miRNA: 3'- -GGGUCC-------------GGUGGGCCGGCG-----GGCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 115976 | 0.76 | 0.11259 |
Target: 5'- aCCCGGGCCcgguccuccucggugGCgCCGGCgucggGCCCgGCGGCCa -3' miRNA: 3'- -GGGUCCGG---------------UG-GGCCGg----CGGG-CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 16386 | 0.76 | 0.114173 |
Target: 5'- gCgCAGGCCGCCCGGCaGaugaUCGCGGUCa -3' miRNA: 3'- -GgGUCCGGUGGGCCGgCg---GGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 80367 | 0.76 | 0.114173 |
Target: 5'- cUCCuGGCCgGCCCGcuCCGgCCGCGGCCu -3' miRNA: 3'- -GGGuCCGG-UGGGCc-GGCgGGCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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