miRNA display CGI


Results 21 - 40 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 12376 0.78 0.08219
Target:  5'- cCCCGGGCCcguCCCcGUCGCCgggguCGCGGCCg -3'
miRNA:   3'- -GGGUCCGGu--GGGcCGGCGG-----GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 130411 0.78 0.086171
Target:  5'- uCgCGGGCCgGCCCGccGCCGggcCCCGCGGCCg -3'
miRNA:   3'- -GgGUCCGG-UGGGC--CGGC---GGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 102137 0.78 0.086172
Target:  5'- aCCCuGGCCGuCUaCGGCCGCgaCCGCGGCUg -3'
miRNA:   3'- -GGGuCCGGU-GG-GCCGGCG--GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 9578 0.78 0.092489
Target:  5'- gCCC-GGCC-CCCGGCCcCCCGgCGGCUc -3'
miRNA:   3'- -GGGuCCGGuGGGCCGGcGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 118657 0.77 0.094691
Target:  5'- cUCCGGG-CGCCCGGCCGCCCGUcaucGUCu -3'
miRNA:   3'- -GGGUCCgGUGGGCCGGCGGGCGc---CGG- -5'
9186 3' -68.4 NC_002512.2 + 38921 0.77 0.099244
Target:  5'- gCCCggagGGGCCGCCgCGGCgggCGCCCGCGuGCg -3'
miRNA:   3'- -GGG----UCCGGUGG-GCCG---GCGGGCGC-CGg -5'
9186 3' -68.4 NC_002512.2 + 91190 0.77 0.101597
Target:  5'- aCCAcgacggcggcGGCCGCgCCGGCCccGUUCGCGGCCg -3'
miRNA:   3'- gGGU----------CCGGUG-GGCCGG--CGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7624 0.77 0.101597
Target:  5'- gCCuGGCCGCCCgccgcGGCCGCCguCGCGGUg -3'
miRNA:   3'- gGGuCCGGUGGG-----CCGGCGG--GCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 61001 0.77 0.101597
Target:  5'- cUCCucGuCCGCCCGGCCG-CCGCGGUCg -3'
miRNA:   3'- -GGGucC-GGUGGGCCGGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 31910 0.77 0.104003
Target:  5'- aCCAcGGCCgcGCCCGcGCCGUCCGggaCGGCCu -3'
miRNA:   3'- gGGU-CCGG--UGGGC-CGGCGGGC---GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 91993 0.77 0.104003
Target:  5'- gUCCGGGUCuCCCGcGUCGCCgGCGGCg -3'
miRNA:   3'- -GGGUCCGGuGGGC-CGGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 96554 0.77 0.104003
Target:  5'- aCCGGcCCGCCCgcggcGGCgGCCCGCGGCa -3'
miRNA:   3'- gGGUCcGGUGGG-----CCGgCGGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 129080 0.77 0.106463
Target:  5'- uCCCcGGCgaACCCGGCgucgagggccCGCCCGCGGaCCa -3'
miRNA:   3'- -GGGuCCGg-UGGGCCG----------GCGGGCGCC-GG- -5'
9186 3' -68.4 NC_002512.2 + 41506 0.77 0.106463
Target:  5'- gCUCGGGCCGCaaGGgCGCCgGCGGCg -3'
miRNA:   3'- -GGGUCCGGUGggCCgGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 121433 0.77 0.108977
Target:  5'- aCCCGGcGCCGCCCGGggagggaccccCCgGCCCcCGGCCc -3'
miRNA:   3'- -GGGUC-CGGUGGGCC-----------GG-CGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 134501 0.77 0.108977
Target:  5'- gCCaggGGGCgGCUCGGCCGCCCcCGGCa -3'
miRNA:   3'- -GGg--UCCGgUGGGCCGGCGGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 137622 0.76 0.111287
Target:  5'- uUCCGGGagaccgcgcggauCUACCCGGCCGCggcggCCGCGGCg -3'
miRNA:   3'- -GGGUCC-------------GGUGGGCCGGCG-----GGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 115976 0.76 0.11259
Target:  5'- aCCCGGGCCcgguccuccucggugGCgCCGGCgucggGCCCgGCGGCCa -3'
miRNA:   3'- -GGGUCCGG---------------UG-GGCCGg----CGGG-CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 80367 0.76 0.114173
Target:  5'- cUCCuGGCCgGCCCGcuCCGgCCGCGGCCu -3'
miRNA:   3'- -GGGuCCGG-UGGGCc-GGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 16386 0.76 0.114173
Target:  5'- gCgCAGGCCGCCCGGCaGaugaUCGCGGUCa -3'
miRNA:   3'- -GgGUCCGGUGGGCCGgCg---GGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.