miRNA display CGI


Results 21 - 40 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 122902 0.66 0.517899
Target:  5'- nCCGGGCguCCCGGCCuucuacggggacgaGCgCGagcgcugcaacuuCGGCCu -3'
miRNA:   3'- gGGUCCGguGGGCCGG--------------CGgGC-------------GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 16218 0.66 0.516161
Target:  5'- gCCGGGCUcCCCuccgccuccgucaucGucgucgucgccGUCGCCCGCGGCg -3'
miRNA:   3'- gGGUCCGGuGGG---------------C-----------CGGCGGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 38722 0.66 0.516161
Target:  5'- gCCguGGCgGCCCgggcgGGacagucauguucacuCCGCCCGgGGCg -3'
miRNA:   3'- -GGguCCGgUGGG-----CC---------------GGCGGGCgCCGg -5'
9186 3' -68.4 NC_002512.2 + 130531 0.66 0.512693
Target:  5'- uCCCGGGC--CCCGcGCuCG-UCGCGGUCg -3'
miRNA:   3'- -GGGUCCGguGGGC-CG-GCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 79122 0.66 0.512693
Target:  5'- gCCGagucGGCCGucaaucacggguCUgGGCCGCgCGCgGGCCg -3'
miRNA:   3'- gGGU----CCGGU------------GGgCCGGCGgGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 127568 0.66 0.512693
Target:  5'- gUCCGGGagGCCCgacGGaCCGUCCGCGacgucGCCc -3'
miRNA:   3'- -GGGUCCggUGGG---CC-GGCGGGCGC-----CGG- -5'
9186 3' -68.4 NC_002512.2 + 37272 0.66 0.512693
Target:  5'- gUgAGGCCGCC--GUCGCCCgccGCGGCg -3'
miRNA:   3'- gGgUCCGGUGGgcCGGCGGG---CGCCGg -5'
9186 3' -68.4 NC_002512.2 + 127888 0.66 0.512693
Target:  5'- aCCCGGGCCcggguCCgGGCguCGUCCaucuCGGCUc -3'
miRNA:   3'- -GGGUCCGGu----GGgCCG--GCGGGc---GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 71237 0.66 0.512693
Target:  5'- uCCCGuccucggucgcGGCCGaguaCGGCuucggcgggggCGCCgGCGGCCu -3'
miRNA:   3'- -GGGU-----------CCGGUgg--GCCG-----------GCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 79838 0.66 0.512693
Target:  5'- cCCCuc-CCGCCCcGUCGUCCcCGGCCc -3'
miRNA:   3'- -GGGuccGGUGGGcCGGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 81441 0.66 0.512693
Target:  5'- cCCgCGGGggGCCCGGCC-CCCguccucccccgGCGGUCc -3'
miRNA:   3'- -GG-GUCCggUGGGCCGGcGGG-----------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 73061 0.66 0.512693
Target:  5'- uCCgGGGUCGC-CGG-CGCCCaCGGCg -3'
miRNA:   3'- -GGgUCCGGUGgGCCgGCGGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 38907 0.66 0.512693
Target:  5'- uCCCcGGCCuCCuCGGUa-CCCGCGGaCa -3'
miRNA:   3'- -GGGuCCGGuGG-GCCGgcGGGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 44652 0.66 0.512693
Target:  5'- gCCgCAGGUCauggcgcacGCCgGGCUGCgCgGgGGCCu -3'
miRNA:   3'- -GG-GUCCGG---------UGGgCCGGCG-GgCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 75005 0.66 0.512693
Target:  5'- --aGGGCCGCCgGGUC-CCCGaaaacaGGUCg -3'
miRNA:   3'- gggUCCGGUGGgCCGGcGGGCg-----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 81092 0.66 0.512693
Target:  5'- uCCCgAGGCuCGCCUacggGGcCCGCuCCGCcgacGCCg -3'
miRNA:   3'- -GGG-UCCG-GUGGG----CC-GGCG-GGCGc---CGG- -5'
9186 3' -68.4 NC_002512.2 + 124613 0.66 0.512693
Target:  5'- gCCguGGCagccgaacuGCCCGGCCGacucCCCGUugacGGUCa -3'
miRNA:   3'- -GGguCCGg--------UGGGCCGGC----GGGCG----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 125269 0.66 0.512693
Target:  5'- aCCUcGGCC-CCgCGGgCGUCCcUGGCCc -3'
miRNA:   3'- -GGGuCCGGuGG-GCCgGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 118790 0.66 0.512693
Target:  5'- uCCCGGGCgCGCacgaGGaCGaCCCGgGGCUc -3'
miRNA:   3'- -GGGUCCG-GUGgg--CCgGC-GGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 106395 0.66 0.512693
Target:  5'- aCCCAGugcugaaccugaGCCugacgaacgGCCCGGuguuCCGCCCG-GGCg -3'
miRNA:   3'- -GGGUC------------CGG---------UGGGCC----GGCGGGCgCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.