miRNA display CGI


Results 21 - 40 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 103497 0.74 0.150495
Target:  5'- gCCCGGGgC-CCCGGgCGCUCucccggGCGGCCa -3'
miRNA:   3'- -GGGUCCgGuGGGCCgGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 36672 0.75 0.147105
Target:  5'- cCCCAGGCUGCCgGGCaacggcgaGCCgaagaCGCGGUCg -3'
miRNA:   3'- -GGGUCCGGUGGgCCGg-------CGG-----GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 102137 0.78 0.086172
Target:  5'- aCCCuGGCCGuCUaCGGCCGCgaCCGCGGCUg -3'
miRNA:   3'- -GGGuCCGGU-GG-GCCGGCG--GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 133675 0.82 0.048567
Target:  5'- gCCGcGGCCGCCgUGGCCGaCCuCGCGGCCg -3'
miRNA:   3'- gGGU-CCGGUGG-GCCGGC-GG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 116608 0.74 0.161095
Target:  5'- --gAGGcCCGCCgCGGCUGcCCCGCcGGCCg -3'
miRNA:   3'- gggUCC-GGUGG-GCCGGC-GGGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 18107 0.74 0.155361
Target:  5'- cCCCGcGGCCACCCGGgccuCCacguccucccgcagcGCCCG-GGCCg -3'
miRNA:   3'- -GGGU-CCGGUGGGCC----GG---------------CGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 58041 0.76 0.12819
Target:  5'- uCCC-GGCCGCggCCGGaCCGuCCCGCGGUa -3'
miRNA:   3'- -GGGuCCGGUG--GGCC-GGC-GGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 72728 0.83 0.04101
Target:  5'- gCCCAcGCCGCCCGGCCcgccGCCCGCcccgGGCCc -3'
miRNA:   3'- -GGGUcCGGUGGGCCGG----CGGGCG----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 2389 0.74 0.153956
Target:  5'- cCCCGGGUCgcggcgucuccuACcuccucgcggCCGGCCGCCCcCGGCCu -3'
miRNA:   3'- -GGGUCCGG------------UG----------GGCCGGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 139217 0.88 0.017906
Target:  5'- gCCCuGGCCGCCgCGGCCGCcgacuccgagaCCGCGGCCg -3'
miRNA:   3'- -GGGuCCGGUGG-GCCGGCG-----------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 24846 0.75 0.134231
Target:  5'- gCCCGcGGCCGgUCGGCgGCggaCGCGGCCc -3'
miRNA:   3'- -GGGU-CCGGUgGGCCGgCGg--GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 72515 0.74 0.153956
Target:  5'- gUCCGGuCCcuGCCCGGCgGCCCggaccucgGCGGCCa -3'
miRNA:   3'- -GGGUCcGG--UGGGCCGgCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 91993 0.77 0.104003
Target:  5'- gUCCGGGUCuCCCGcGUCGCCgGCGGCg -3'
miRNA:   3'- -GGGUCCGGuGGGC-CGGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 9578 0.78 0.092489
Target:  5'- gCCC-GGCC-CCCGGCCcCCCGgCGGCUc -3'
miRNA:   3'- -GGGuCCGGuGGGCCGGcGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3143 0.79 0.071275
Target:  5'- gUCC-GGCCggaGCCCGGUcccgccgucguCGCCCGCGGCCu -3'
miRNA:   3'- -GGGuCCGG---UGGGCCG-----------GCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 69049 0.81 0.056111
Target:  5'- gCCCAGcGCCG-CCGGCCGCCCGCcuGCUg -3'
miRNA:   3'- -GGGUC-CGGUgGGCCGGCGGGCGc-CGG- -5'
9186 3' -68.4 NC_002512.2 + 112007 0.74 0.164776
Target:  5'- -aCGGGCC-CCCGGCgucCGuCuuGCGGCCg -3'
miRNA:   3'- ggGUCCGGuGGGCCG---GC-GggCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 137350 0.74 0.164404
Target:  5'- gCCGcGGCCGCCgCGGCCGgguagauCCgCGCGGUCu -3'
miRNA:   3'- gGGU-CCGGUGG-GCCGGC-------GG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 36408 0.74 0.160731
Target:  5'- gUCCAGGCCGucgugggccucguCCCGGagggcccgcucCCGCCaccgGCGGCCg -3'
miRNA:   3'- -GGGUCCGGU-------------GGGCC-----------GGCGGg---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 68901 0.74 0.157133
Target:  5'- gCCgGGGCggucgugCugCUGGCCG-CCGCGGCCu -3'
miRNA:   3'- -GGgUCCG-------GugGGCCGGCgGGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.