miRNA display CGI


Results 21 - 40 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 4080 1.1 0.000401
Target:  5'- uCCCAGGCCACCCGGCCGCCCGCGGCCc -3'
miRNA:   3'- -GGGUCCGGUGGGCCGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 28198 0.74 0.157489
Target:  5'- uCCCGcaccagacgcGGCCGCCCucGCCGaagaaggaaCCGCGGCCg -3'
miRNA:   3'- -GGGU----------CCGGUGGGc-CGGCg--------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 8117 0.74 0.157489
Target:  5'- gCCAGGaCACgaCGGCCGCCCaGCuGCCg -3'
miRNA:   3'- gGGUCCgGUGg-GCCGGCGGG-CGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 126557 0.75 0.147105
Target:  5'- cCCCGGGCUAC---GCCGCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGUGggcCGGCGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 118657 0.77 0.094691
Target:  5'- cUCCGGG-CGCCCGGCCGCCCGUcaucGUCu -3'
miRNA:   3'- -GGGUCCgGUGGGCCGGCGGGCGc---CGG- -5'
9186 3' -68.4 NC_002512.2 + 49229 0.74 0.164776
Target:  5'- uUCgGGGCCACCgCGGCgGCCUGCcGCa -3'
miRNA:   3'- -GGgUCCGGUGG-GCCGgCGGGCGcCGg -5'
9186 3' -68.4 NC_002512.2 + 2247 0.74 0.160731
Target:  5'- aCCCGGGCgcuccguCGCCUGaccucgccgccGCCGCCCGCccuccGGCCg -3'
miRNA:   3'- -GGGUCCG-------GUGGGC-----------CGGCGGGCG-----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 135235 0.79 0.074749
Target:  5'- cCCCGGGCCGCCUcgaGGCCGUcguCCGC-GCCg -3'
miRNA:   3'- -GGGUCCGGUGGG---CCGGCG---GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 76440 0.74 0.153956
Target:  5'- gCUCGGGUauaaaagccgCGCCCGGCCgGCCUGCcGCCa -3'
miRNA:   3'- -GGGUCCG----------GUGGGCCGG-CGGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 103497 0.74 0.150495
Target:  5'- gCCCGGGgC-CCCGGgCGCUCucccggGCGGCCa -3'
miRNA:   3'- -GGGUCCgGuGGGCCgGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3009 0.8 0.06176
Target:  5'- uCCCGGGCCuuCCUGGCCuCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGu-GGGCCGGcGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 119223 0.8 0.060298
Target:  5'- aCCAGGa---CCGGCUGCCCGCGGUCg -3'
miRNA:   3'- gGGUCCggugGGCCGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 31733 0.74 0.168531
Target:  5'- gCCGGcGCCgACCCGGcCCGCgCGgGGCUc -3'
miRNA:   3'- gGGUC-CGG-UGGGCC-GGCGgGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 101964 0.74 0.164776
Target:  5'- cCCgCGGGCC-CgCCGGCgGgCUCGUGGCCg -3'
miRNA:   3'- -GG-GUCCGGuG-GGCCGgC-GGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 68901 0.74 0.157133
Target:  5'- gCCgGGGCggucgugCugCUGGCCG-CCGCGGCCu -3'
miRNA:   3'- -GGgUCCG-------GugGGCCGGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 121433 0.77 0.108977
Target:  5'- aCCCGGcGCCGCCCGGggagggaccccCCgGCCCcCGGCCc -3'
miRNA:   3'- -GGGUC-CGGUGGGCC-----------GG-CGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 38921 0.77 0.099244
Target:  5'- gCCCggagGGGCCGCCgCGGCgggCGCCCGCGuGCg -3'
miRNA:   3'- -GGG----UCCGGUGG-GCCG---GCGGGCGC-CGg -5'
9186 3' -68.4 NC_002512.2 + 69049 0.81 0.056111
Target:  5'- gCCCAGcGCCG-CCGGCCGCCCGCcuGCUg -3'
miRNA:   3'- -GGGUC-CGGUgGGCCGGCGGGCGc-CGG- -5'
9186 3' -68.4 NC_002512.2 + 126385 0.74 0.150495
Target:  5'- aCCAacGcGCUGCCCGGCgagcgGUCCGCGGCCg -3'
miRNA:   3'- gGGU--C-CGGUGGGCCGg----CGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 103218 0.74 0.153956
Target:  5'- uCCgAGGCgGCUCGcgucGCCGCCCGUcgacGGCCg -3'
miRNA:   3'- -GGgUCCGgUGGGC----CGGCGGGCG----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.