miRNA display CGI


Results 41 - 60 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 3009 0.8 0.06176
Target:  5'- uCCCGGGCCuuCCUGGCCuCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGu-GGGCCGGcGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 31733 0.74 0.168531
Target:  5'- gCCGGcGCCgACCCGGcCCGCgCGgGGCUc -3'
miRNA:   3'- gGGUC-CGG-UGGGCC-GGCGgGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 105113 0.73 0.201422
Target:  5'- aCCCGGGaCUGCgCGGUCGUCUG-GGCCg -3'
miRNA:   3'- -GGGUCC-GGUGgGCCGGCGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 97880 0.73 0.197024
Target:  5'- gCCgAGGuCCcCCCGG-CGCCCgggGCGGCCc -3'
miRNA:   3'- -GGgUCC-GGuGGGCCgGCGGG---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 101964 0.74 0.164776
Target:  5'- cCCgCGGGCC-CgCCGGCgGgCUCGUGGCCg -3'
miRNA:   3'- -GG-GUCCGGuG-GGCCGgC-GGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 121433 0.77 0.108977
Target:  5'- aCCCGGcGCCGCCCGGggagggaccccCCgGCCCcCGGCCc -3'
miRNA:   3'- -GGGUC-CGGUGGGCC-----------GG-CGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 119223 0.8 0.060298
Target:  5'- aCCAGGa---CCGGCUGCCCGCGGUCg -3'
miRNA:   3'- gGGUCCggugGGCCGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 69049 0.81 0.056111
Target:  5'- gCCCAGcGCCG-CCGGCCGCCCGCcuGCUg -3'
miRNA:   3'- -GGGUC-CGGUgGGCCGGCGGGCGc-CGG- -5'
9186 3' -68.4 NC_002512.2 + 126385 0.74 0.150495
Target:  5'- aCCAacGcGCUGCCCGGCgagcgGUCCGCGGCCg -3'
miRNA:   3'- gGGU--C-CGGUGGGCCGg----CGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 28198 0.74 0.157489
Target:  5'- uCCCGcaccagacgcGGCCGCCCucGCCGaagaaggaaCCGCGGCCg -3'
miRNA:   3'- -GGGU----------CCGGUGGGc-CGGCg--------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 68901 0.74 0.157133
Target:  5'- gCCgGGGCggucgugCugCUGGCCG-CCGCGGCCu -3'
miRNA:   3'- -GGgUCCG-------GugGGCCGGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 36672 0.75 0.147105
Target:  5'- cCCCAGGCUGCCgGGCaacggcgaGCCgaagaCGCGGUCg -3'
miRNA:   3'- -GGGUCCGGUGGgCCGg-------CGG-----GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 70735 0.79 0.076546
Target:  5'- aCgGGaGCgCGCCCGGCCGCCUcacuuggaGCGGCCg -3'
miRNA:   3'- gGgUC-CG-GUGGGCCGGCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 142000 0.73 0.184329
Target:  5'- gUuuGGGCgAUCCGGCgGCcgucucuuCCGCGGCCg -3'
miRNA:   3'- -GggUCCGgUGGGCCGgCG--------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 41238 0.73 0.176273
Target:  5'- -aCGGGCCGCCgCcGCCGCCggcgcccuUGCGGCCc -3'
miRNA:   3'- ggGUCCGGUGG-GcCGGCGG--------GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 137350 0.74 0.164404
Target:  5'- gCCGcGGCCGCCgCGGCCGgguagauCCgCGCGGUCu -3'
miRNA:   3'- gGGU-CCGGUGG-GCCGGC-------GG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 15619 0.73 0.194425
Target:  5'- gCCAGGCCAggcgacagcggaacuCCuCGGCCGCggGCGGCg -3'
miRNA:   3'- gGGUCCGGU---------------GG-GCCGGCGggCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 38449 0.66 0.524874
Target:  5'- cCCCGGGCggagUgaacaugacugucccGCCCgGGCCGCCa-CGGCg -3'
miRNA:   3'- -GGGUCCG----G---------------UGGG-CCGGCGGgcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 9680 0.73 0.201422
Target:  5'- cCCCGGGCCGCCgucgGGCC-CCgGCGGg- -3'
miRNA:   3'- -GGGUCCGGUGGg---CCGGcGGgCGCCgg -5'
9186 3' -68.4 NC_002512.2 + 2192 0.73 0.19271
Target:  5'- gCCCccGCCGCCgucgucgucuCGGUCGCCgGCGGCg -3'
miRNA:   3'- -GGGucCGGUGG----------GCCGGCGGgCGCCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.