Results 41 - 60 of 736 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9186 | 3' | -68.4 | NC_002512.2 | + | 3009 | 0.8 | 0.06176 |
Target: 5'- uCCCGGGCCuuCCUGGCCuCCCG-GGCCu -3' miRNA: 3'- -GGGUCCGGu-GGGCCGGcGGGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 31733 | 0.74 | 0.168531 |
Target: 5'- gCCGGcGCCgACCCGGcCCGCgCGgGGCUc -3' miRNA: 3'- gGGUC-CGG-UGGGCC-GGCGgGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 105113 | 0.73 | 0.201422 |
Target: 5'- aCCCGGGaCUGCgCGGUCGUCUG-GGCCg -3' miRNA: 3'- -GGGUCC-GGUGgGCCGGCGGGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 97880 | 0.73 | 0.197024 |
Target: 5'- gCCgAGGuCCcCCCGG-CGCCCgggGCGGCCc -3' miRNA: 3'- -GGgUCC-GGuGGGCCgGCGGG---CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 101964 | 0.74 | 0.164776 |
Target: 5'- cCCgCGGGCC-CgCCGGCgGgCUCGUGGCCg -3' miRNA: 3'- -GG-GUCCGGuG-GGCCGgC-GGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 121433 | 0.77 | 0.108977 |
Target: 5'- aCCCGGcGCCGCCCGGggagggaccccCCgGCCCcCGGCCc -3' miRNA: 3'- -GGGUC-CGGUGGGCC-----------GG-CGGGcGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 119223 | 0.8 | 0.060298 |
Target: 5'- aCCAGGa---CCGGCUGCCCGCGGUCg -3' miRNA: 3'- gGGUCCggugGGCCGGCGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 69049 | 0.81 | 0.056111 |
Target: 5'- gCCCAGcGCCG-CCGGCCGCCCGCcuGCUg -3' miRNA: 3'- -GGGUC-CGGUgGGCCGGCGGGCGc-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 126385 | 0.74 | 0.150495 |
Target: 5'- aCCAacGcGCUGCCCGGCgagcgGUCCGCGGCCg -3' miRNA: 3'- gGGU--C-CGGUGGGCCGg----CGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 28198 | 0.74 | 0.157489 |
Target: 5'- uCCCGcaccagacgcGGCCGCCCucGCCGaagaaggaaCCGCGGCCg -3' miRNA: 3'- -GGGU----------CCGGUGGGc-CGGCg--------GGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 68901 | 0.74 | 0.157133 |
Target: 5'- gCCgGGGCggucgugCugCUGGCCG-CCGCGGCCu -3' miRNA: 3'- -GGgUCCG-------GugGGCCGGCgGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 36672 | 0.75 | 0.147105 |
Target: 5'- cCCCAGGCUGCCgGGCaacggcgaGCCgaagaCGCGGUCg -3' miRNA: 3'- -GGGUCCGGUGGgCCGg-------CGG-----GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 70735 | 0.79 | 0.076546 |
Target: 5'- aCgGGaGCgCGCCCGGCCGCCUcacuuggaGCGGCCg -3' miRNA: 3'- gGgUC-CG-GUGGGCCGGCGGG--------CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 142000 | 0.73 | 0.184329 |
Target: 5'- gUuuGGGCgAUCCGGCgGCcgucucuuCCGCGGCCg -3' miRNA: 3'- -GggUCCGgUGGGCCGgCG--------GGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 41238 | 0.73 | 0.176273 |
Target: 5'- -aCGGGCCGCCgCcGCCGCCggcgcccuUGCGGCCc -3' miRNA: 3'- ggGUCCGGUGG-GcCGGCGG--------GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 137350 | 0.74 | 0.164404 |
Target: 5'- gCCGcGGCCGCCgCGGCCGgguagauCCgCGCGGUCu -3' miRNA: 3'- gGGU-CCGGUGG-GCCGGC-------GG-GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 15619 | 0.73 | 0.194425 |
Target: 5'- gCCAGGCCAggcgacagcggaacuCCuCGGCCGCggGCGGCg -3' miRNA: 3'- gGGUCCGGU---------------GG-GCCGGCGggCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 38449 | 0.66 | 0.524874 |
Target: 5'- cCCCGGGCggagUgaacaugacugucccGCCCgGGCCGCCa-CGGCg -3' miRNA: 3'- -GGGUCCG----G---------------UGGG-CCGGCGGgcGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 9680 | 0.73 | 0.201422 |
Target: 5'- cCCCGGGCCGCCgucgGGCC-CCgGCGGg- -3' miRNA: 3'- -GGGUCCGGUGGg---CCGGcGGgCGCCgg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 2192 | 0.73 | 0.19271 |
Target: 5'- gCCCccGCCGCCgucgucgucuCGGUCGCCgGCGGCg -3' miRNA: 3'- -GGGucCGGUGG----------GCCGGCGGgCGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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