miRNA display CGI


Results 41 - 60 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 2737 0.76 0.116857
Target:  5'- cCCCaAGGCCGCCCGGaccuacucUCGCgCGCGGgCg -3'
miRNA:   3'- -GGG-UCCGGUGGGCC--------GGCGgGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 121634 0.76 0.119599
Target:  5'- gCgAGGCCggGCCCGG-CGCCCGacCGGCCg -3'
miRNA:   3'- gGgUCCGG--UGGGCCgGCGGGC--GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 84075 0.76 0.119599
Target:  5'- aCCCGGGCCcggACgCCGccGCCGCCgGCGcGCCc -3'
miRNA:   3'- -GGGUCCGG---UG-GGC--CGGCGGgCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 58041 0.76 0.12819
Target:  5'- uCCC-GGCCGCggCCGGaCCGuCCCGCGGUa -3'
miRNA:   3'- -GGGuCCGGUG--GGCC-GGC-GGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 4356 0.76 0.12819
Target:  5'- uCCCgAGGCUGCgCCGGCCggGCCgcggGCGGCCg -3'
miRNA:   3'- -GGG-UCCGGUG-GGCCGG--CGGg---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7954 0.75 0.130275
Target:  5'- uCCCGGGCCGCggCCGGCguCGUCCGUuucuucgucgggguGGCCg -3'
miRNA:   3'- -GGGUCCGGUG--GGCCG--GCGGGCG--------------CCGG- -5'
9186 3' -68.4 NC_002512.2 + 86619 0.75 0.131179
Target:  5'- cUCCAgGGCgCGCCUGGCgGCCUcgucgccgucgGCGGCCg -3'
miRNA:   3'- -GGGU-CCG-GUGGGCCGgCGGG-----------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 24846 0.75 0.134231
Target:  5'- gCCCGcGGCCGgUCGGCgGCggaCGCGGCCc -3'
miRNA:   3'- -GGGU-CCGGUgGGCCGgCGg--GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 126768 0.75 0.13547
Target:  5'- gUCAGGCCGCCgGaGCCGCcgaggcgcucgcgcuCCGgGGCCa -3'
miRNA:   3'- gGGUCCGGUGGgC-CGGCG---------------GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 113797 0.75 0.137349
Target:  5'- aCCAGGCguUCaacGCgGCCCGCGGCCu -3'
miRNA:   3'- gGGUCCGguGGgc-CGgCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 6592 0.75 0.137349
Target:  5'- gCCCGcGGCCccgcGCCCGGuCCcCCCGCGGgCg -3'
miRNA:   3'- -GGGU-CCGG----UGGGCC-GGcGGGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 23169 0.75 0.137349
Target:  5'- gUCAGcaggaagaaGCCGCCCGGgaUGCCCGUGGCCc -3'
miRNA:   3'- gGGUC---------CGGUGGGCCg-GCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 73190 0.75 0.140212
Target:  5'- aCCCuGGUgGCCCGGCCGUUCGCcgacgucGGCa -3'
miRNA:   3'- -GGGuCCGgUGGGCCGGCGGGCG-------CCGg -5'
9186 3' -68.4 NC_002512.2 + 101855 0.75 0.143785
Target:  5'- gCCGGGCCGa-CGGCCGCCCGCacGaCCg -3'
miRNA:   3'- gGGUCCGGUggGCCGGCGGGCGc-C-GG- -5'
9186 3' -68.4 NC_002512.2 + 60088 0.75 0.143785
Target:  5'- gCCAuGGCCGCC--GCCG-CCGCGGCCg -3'
miRNA:   3'- gGGU-CCGGUGGgcCGGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 36672 0.75 0.147105
Target:  5'- cCCCAGGCUGCCgGGCaacggcgaGCCgaagaCGCGGUCg -3'
miRNA:   3'- -GGGUCCGGUGGgCCGg-------CGG-----GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 5420 0.75 0.147105
Target:  5'- gCCGGccGCCGcCCCGGUCGCgCCGCuGCCg -3'
miRNA:   3'- gGGUC--CGGU-GGGCCGGCG-GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 28235 0.75 0.147105
Target:  5'- cCCCGcGCCggaaucucGCCCGGCCGCCCauCGGCg -3'
miRNA:   3'- -GGGUcCGG--------UGGGCCGGCGGGc-GCCGg -5'
9186 3' -68.4 NC_002512.2 + 126557 0.75 0.147105
Target:  5'- cCCCGGGCUAC---GCCGCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGUGggcCGGCGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 126385 0.74 0.150495
Target:  5'- aCCAacGcGCUGCCCGGCgagcgGUCCGCGGCCg -3'
miRNA:   3'- gGGU--C-CGGUGGGCCGg----CGGGCGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.