Results 41 - 60 of 736 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9186 | 3' | -68.4 | NC_002512.2 | + | 2737 | 0.76 | 0.116857 |
Target: 5'- cCCCaAGGCCGCCCGGaccuacucUCGCgCGCGGgCg -3' miRNA: 3'- -GGG-UCCGGUGGGCC--------GGCGgGCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 121634 | 0.76 | 0.119599 |
Target: 5'- gCgAGGCCggGCCCGG-CGCCCGacCGGCCg -3' miRNA: 3'- gGgUCCGG--UGGGCCgGCGGGC--GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 84075 | 0.76 | 0.119599 |
Target: 5'- aCCCGGGCCcggACgCCGccGCCGCCgGCGcGCCc -3' miRNA: 3'- -GGGUCCGG---UG-GGC--CGGCGGgCGC-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 58041 | 0.76 | 0.12819 |
Target: 5'- uCCC-GGCCGCggCCGGaCCGuCCCGCGGUa -3' miRNA: 3'- -GGGuCCGGUG--GGCC-GGC-GGGCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 4356 | 0.76 | 0.12819 |
Target: 5'- uCCCgAGGCUGCgCCGGCCggGCCgcggGCGGCCg -3' miRNA: 3'- -GGG-UCCGGUG-GGCCGG--CGGg---CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 7954 | 0.75 | 0.130275 |
Target: 5'- uCCCGGGCCGCggCCGGCguCGUCCGUuucuucgucgggguGGCCg -3' miRNA: 3'- -GGGUCCGGUG--GGCCG--GCGGGCG--------------CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 86619 | 0.75 | 0.131179 |
Target: 5'- cUCCAgGGCgCGCCUGGCgGCCUcgucgccgucgGCGGCCg -3' miRNA: 3'- -GGGU-CCG-GUGGGCCGgCGGG-----------CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 24846 | 0.75 | 0.134231 |
Target: 5'- gCCCGcGGCCGgUCGGCgGCggaCGCGGCCc -3' miRNA: 3'- -GGGU-CCGGUgGGCCGgCGg--GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 126768 | 0.75 | 0.13547 |
Target: 5'- gUCAGGCCGCCgGaGCCGCcgaggcgcucgcgcuCCGgGGCCa -3' miRNA: 3'- gGGUCCGGUGGgC-CGGCG---------------GGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 113797 | 0.75 | 0.137349 |
Target: 5'- aCCAGGCguUCaacGCgGCCCGCGGCCu -3' miRNA: 3'- gGGUCCGguGGgc-CGgCGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 6592 | 0.75 | 0.137349 |
Target: 5'- gCCCGcGGCCccgcGCCCGGuCCcCCCGCGGgCg -3' miRNA: 3'- -GGGU-CCGG----UGGGCC-GGcGGGCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 23169 | 0.75 | 0.137349 |
Target: 5'- gUCAGcaggaagaaGCCGCCCGGgaUGCCCGUGGCCc -3' miRNA: 3'- gGGUC---------CGGUGGGCCg-GCGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 73190 | 0.75 | 0.140212 |
Target: 5'- aCCCuGGUgGCCCGGCCGUUCGCcgacgucGGCa -3' miRNA: 3'- -GGGuCCGgUGGGCCGGCGGGCG-------CCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 101855 | 0.75 | 0.143785 |
Target: 5'- gCCGGGCCGa-CGGCCGCCCGCacGaCCg -3' miRNA: 3'- gGGUCCGGUggGCCGGCGGGCGc-C-GG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 60088 | 0.75 | 0.143785 |
Target: 5'- gCCAuGGCCGCC--GCCG-CCGCGGCCg -3' miRNA: 3'- gGGU-CCGGUGGgcCGGCgGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 36672 | 0.75 | 0.147105 |
Target: 5'- cCCCAGGCUGCCgGGCaacggcgaGCCgaagaCGCGGUCg -3' miRNA: 3'- -GGGUCCGGUGGgCCGg-------CGG-----GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 5420 | 0.75 | 0.147105 |
Target: 5'- gCCGGccGCCGcCCCGGUCGCgCCGCuGCCg -3' miRNA: 3'- gGGUC--CGGU-GGGCCGGCG-GGCGcCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 28235 | 0.75 | 0.147105 |
Target: 5'- cCCCGcGCCggaaucucGCCCGGCCGCCCauCGGCg -3' miRNA: 3'- -GGGUcCGG--------UGGGCCGGCGGGc-GCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 126557 | 0.75 | 0.147105 |
Target: 5'- cCCCGGGCUAC---GCCGCCCG-GGCCu -3' miRNA: 3'- -GGGUCCGGUGggcCGGCGGGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 126385 | 0.74 | 0.150495 |
Target: 5'- aCCAacGcGCUGCCCGGCgagcgGUCCGCGGCCg -3' miRNA: 3'- gGGU--C-CGGUGGGCCGg----CGGGCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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