Results 41 - 60 of 736 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9186 | 3' | -68.4 | NC_002512.2 | + | 124613 | 0.66 | 0.512693 |
Target: 5'- gCCguGGCagccgaacuGCCCGGCCGacucCCCGUugacGGUCa -3' miRNA: 3'- -GGguCCGg--------UGGGCCGGC----GGGCG----CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 73452 | 0.66 | 0.512693 |
Target: 5'- gCCCu-GCCACCUGGCCuacuUCUGCGGgaCCu -3' miRNA: 3'- -GGGucCGGUGGGCCGGc---GGGCGCC--GG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 81092 | 0.66 | 0.512693 |
Target: 5'- uCCCgAGGCuCGCCUacggGGcCCGCuCCGCcgacGCCg -3' miRNA: 3'- -GGG-UCCG-GUGGG----CC-GGCG-GGCGc---CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 75005 | 0.66 | 0.512693 |
Target: 5'- --aGGGCCGCCgGGUC-CCCGaaaacaGGUCg -3' miRNA: 3'- gggUCCGGUGGgCCGGcGGGCg-----CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 127888 | 0.66 | 0.512693 |
Target: 5'- aCCCGGGCCcggguCCgGGCguCGUCCaucuCGGCUc -3' miRNA: 3'- -GGGUCCGGu----GGgCCG--GCGGGc---GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 38907 | 0.66 | 0.512693 |
Target: 5'- uCCCcGGCCuCCuCGGUa-CCCGCGGaCa -3' miRNA: 3'- -GGGuCCGGuGG-GCCGgcGGGCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 124523 | 0.66 | 0.507507 |
Target: 5'- gCCgAGGCa--CCGGCCGUcgucggucuccgagaCC-CGGCCg -3' miRNA: 3'- -GGgUCCGgugGGCCGGCG---------------GGcGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 59534 | 0.66 | 0.504063 |
Target: 5'- gCCCuGGCCAC---GCUGaUCGCGGCCa -3' miRNA: 3'- -GGGuCCGGUGggcCGGCgGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 55398 | 0.66 | 0.504063 |
Target: 5'- cCCCAGcGCCccGCCgagCGuGCCGCUgGUGGUg -3' miRNA: 3'- -GGGUC-CGG--UGG---GC-CGGCGGgCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 111555 | 0.66 | 0.504063 |
Target: 5'- --gGGaGCCGCgaUCGGCgGCCCucuccccgcgGCGGCCg -3' miRNA: 3'- gggUC-CGGUG--GGCCGgCGGG----------CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 120891 | 0.66 | 0.504063 |
Target: 5'- gUCCGcGCC-CCCGGCguccCGuCCCGCcGCCu -3' miRNA: 3'- -GGGUcCGGuGGGCCG----GC-GGGCGcCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 140453 | 0.66 | 0.504063 |
Target: 5'- gCCCGGacGUgACCCcGCCgacGCCCGaGGCCu -3' miRNA: 3'- -GGGUC--CGgUGGGcCGG---CGGGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 117315 | 0.66 | 0.504063 |
Target: 5'- ---cGGCCACCCGGuuGagggaCaCGGCCg -3' miRNA: 3'- ggguCCGGUGGGCCggCgg---GcGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 110777 | 0.66 | 0.504063 |
Target: 5'- gUCAcGGCgACUCGcucGCgGCgCGCGGCCg -3' miRNA: 3'- gGGU-CCGgUGGGC---CGgCGgGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 65231 | 0.66 | 0.504063 |
Target: 5'- aCCCAcuuucuuaGCCACCCcgaucGCCGCCUGCcGUCc -3' miRNA: 3'- -GGGUc-------CGGUGGGc----CGGCGGGCGcCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 128792 | 0.66 | 0.504063 |
Target: 5'- aCCCucuGGGUC-UCCGGCgugGUCCGCGGgCg -3' miRNA: 3'- -GGG---UCCGGuGGGCCGg--CGGGCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 83707 | 0.66 | 0.504063 |
Target: 5'- gCCCAGGgCGaCCGuGCCGC--GCGGCa -3' miRNA: 3'- -GGGUCCgGUgGGC-CGGCGggCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 60269 | 0.66 | 0.504063 |
Target: 5'- aCCuGGaCCugCCGGCCGaCCUGaagaacaaGGaCCu -3' miRNA: 3'- gGGuCC-GGugGGCCGGC-GGGCg-------CC-GG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 28815 | 0.66 | 0.504063 |
Target: 5'- uCCCAGaCCccgcacauguggGCCCGGucgauCCGCCUGCuGaGCCg -3' miRNA: 3'- -GGGUCcGG------------UGGGCC-----GGCGGGCG-C-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 137349 | 0.66 | 0.504063 |
Target: 5'- aCCCc-GCgCGCCUGGgCGCacaCCGgGGCCu -3' miRNA: 3'- -GGGucCG-GUGGGCCgGCG---GGCgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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