miRNA display CGI


Results 41 - 60 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 75005 0.66 0.512693
Target:  5'- --aGGGCCGCCgGGUC-CCCGaaaacaGGUCg -3'
miRNA:   3'- gggUCCGGUGGgCCGGcGGGCg-----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 44652 0.66 0.512693
Target:  5'- gCCgCAGGUCauggcgcacGCCgGGCUGCgCgGgGGCCu -3'
miRNA:   3'- -GG-GUCCGG---------UGGgCCGGCG-GgCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 38907 0.66 0.512693
Target:  5'- uCCCcGGCCuCCuCGGUa-CCCGCGGaCa -3'
miRNA:   3'- -GGGuCCGGuGG-GCCGgcGGGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 130531 0.66 0.512693
Target:  5'- uCCCGGGC--CCCGcGCuCG-UCGCGGUCg -3'
miRNA:   3'- -GGGUCCGguGGGC-CG-GCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 127888 0.66 0.512693
Target:  5'- aCCCGGGCCcggguCCgGGCguCGUCCaucuCGGCUc -3'
miRNA:   3'- -GGGUCCGGu----GGgCCG--GCGGGc---GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 125269 0.66 0.512693
Target:  5'- aCCUcGGCC-CCgCGGgCGUCCcUGGCCc -3'
miRNA:   3'- -GGGuCCGGuGG-GCCgGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 124523 0.66 0.507507
Target:  5'- gCCgAGGCa--CCGGCCGUcgucggucuccgagaCC-CGGCCg -3'
miRNA:   3'- -GGgUCCGgugGGCCGGCG---------------GGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 140453 0.66 0.504063
Target:  5'- gCCCGGacGUgACCCcGCCgacGCCCGaGGCCu -3'
miRNA:   3'- -GGGUC--CGgUGGGcCGG---CGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 59534 0.66 0.504063
Target:  5'- gCCCuGGCCAC---GCUGaUCGCGGCCa -3'
miRNA:   3'- -GGGuCCGGUGggcCGGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 55398 0.66 0.504063
Target:  5'- cCCCAGcGCCccGCCgagCGuGCCGCUgGUGGUg -3'
miRNA:   3'- -GGGUC-CGG--UGG---GC-CGGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 28815 0.66 0.504063
Target:  5'- uCCCAGaCCccgcacauguggGCCCGGucgauCCGCCUGCuGaGCCg -3'
miRNA:   3'- -GGGUCcGG------------UGGGCC-----GGCGGGCG-C-CGG- -5'
9186 3' -68.4 NC_002512.2 + 65231 0.66 0.504063
Target:  5'- aCCCAcuuucuuaGCCACCCcgaucGCCGCCUGCcGUCc -3'
miRNA:   3'- -GGGUc-------CGGUGGGc----CGGCGGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 128792 0.66 0.504063
Target:  5'- aCCCucuGGGUC-UCCGGCgugGUCCGCGGgCg -3'
miRNA:   3'- -GGG---UCCGGuGGGCCGg--CGGGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 147759 0.66 0.504063
Target:  5'- aCguGcGCCAgCgCGGCCGUCCcgacucGCGGCUc -3'
miRNA:   3'- gGguC-CGGUgG-GCCGGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 60269 0.66 0.504063
Target:  5'- aCCuGGaCCugCCGGCCGaCCUGaagaacaaGGaCCu -3'
miRNA:   3'- gGGuCC-GGugGGCCGGC-GGGCg-------CC-GG- -5'
9186 3' -68.4 NC_002512.2 + 83707 0.66 0.504063
Target:  5'- gCCCAGGgCGaCCGuGCCGC--GCGGCa -3'
miRNA:   3'- -GGGUCCgGUgGGC-CGGCGggCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 82636 0.66 0.504063
Target:  5'- gCgCGGaGCCACcgCCGGCCGCagcaucacccuCCGCcGCCc -3'
miRNA:   3'- -GgGUC-CGGUG--GGCCGGCG-----------GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 62571 0.66 0.504063
Target:  5'- gCCCGucGGCUucuuCCCGGUCaUCCGCcGCCu -3'
miRNA:   3'- -GGGU--CCGGu---GGGCCGGcGGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 137349 0.66 0.504063
Target:  5'- aCCCc-GCgCGCCUGGgCGCacaCCGgGGCCu -3'
miRNA:   3'- -GGGucCG-GUGGGCCgGCG---GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 120891 0.66 0.504063
Target:  5'- gUCCGcGCC-CCCGGCguccCGuCCCGCcGCCu -3'
miRNA:   3'- -GGGUcCGGuGGGCCG----GC-GGGCGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.