Results 41 - 60 of 736 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9186 | 3' | -68.4 | NC_002512.2 | + | 85110 | 0.66 | 0.521382 |
Target: 5'- gCCCGGGCgCGCaa---CGCCCGggaCGGCCg -3' miRNA: 3'- -GGGUCCG-GUGggccgGCGGGC---GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 107015 | 0.66 | 0.521382 |
Target: 5'- gCCgCGGGCCGagagCCGGaCGCggagcgccgCCGgGGCCg -3' miRNA: 3'- -GG-GUCCGGUg---GGCCgGCG---------GGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 152114 | 0.66 | 0.521382 |
Target: 5'- gCCCAcGaGUCAUCCGGUCGCguguccgacaCGCGGgCa -3' miRNA: 3'- -GGGU-C-CGGUGGGCCGGCGg---------GCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 38722 | 0.66 | 0.516161 |
Target: 5'- gCCguGGCgGCCCgggcgGGacagucauguucacuCCGCCCGgGGCg -3' miRNA: 3'- -GGguCCGgUGGG-----CC---------------GGCGGGCgCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 71237 | 0.66 | 0.512693 |
Target: 5'- uCCCGuccucggucgcGGCCGaguaCGGCuucggcgggggCGCCgGCGGCCu -3' miRNA: 3'- -GGGU-----------CCGGUgg--GCCG-----------GCGGgCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 73061 | 0.66 | 0.512693 |
Target: 5'- uCCgGGGUCGC-CGG-CGCCCaCGGCg -3' miRNA: 3'- -GGgUCCGGUGgGCCgGCGGGcGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 18409 | 0.66 | 0.521382 |
Target: 5'- gCUGuGCCucgGCCUGGcCCGCgaCGCGGCCc -3' miRNA: 3'- gGGUcCGG---UGGGCC-GGCGg-GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 95077 | 0.66 | 0.512693 |
Target: 5'- gCCCcuGCCugUCGGgCGCCCGgaaGGaCUa -3' miRNA: 3'- -GGGucCGGugGGCCgGCGGGCg--CC-GG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 106395 | 0.66 | 0.512693 |
Target: 5'- aCCCAGugcugaaccugaGCCugacgaacgGCCCGGuguuCCGCCCG-GGCg -3' miRNA: 3'- -GGGUC------------CGG---------UGGGCC----GGCGGGCgCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 118790 | 0.66 | 0.512693 |
Target: 5'- uCCCGGGCgCGCacgaGGaCGaCCCGgGGCUc -3' miRNA: 3'- -GGGUCCG-GUGgg--CCgGC-GGGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 125269 | 0.66 | 0.512693 |
Target: 5'- aCCUcGGCC-CCgCGGgCGUCCcUGGCCc -3' miRNA: 3'- -GGGuCCGGuGG-GCCgGCGGGcGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 127888 | 0.66 | 0.512693 |
Target: 5'- aCCCGGGCCcggguCCgGGCguCGUCCaucuCGGCUc -3' miRNA: 3'- -GGGUCCGGu----GGgCCG--GCGGGc---GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 130531 | 0.66 | 0.512693 |
Target: 5'- uCCCGGGC--CCCGcGCuCG-UCGCGGUCg -3' miRNA: 3'- -GGGUCCGguGGGC-CG-GCgGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 38907 | 0.66 | 0.512693 |
Target: 5'- uCCCcGGCCuCCuCGGUa-CCCGCGGaCa -3' miRNA: 3'- -GGGuCCGGuGG-GCCGgcGGGCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 44652 | 0.66 | 0.512693 |
Target: 5'- gCCgCAGGUCauggcgcacGCCgGGCUGCgCgGgGGCCu -3' miRNA: 3'- -GG-GUCCGG---------UGGgCCGGCG-GgCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 75005 | 0.66 | 0.512693 |
Target: 5'- --aGGGCCGCCgGGUC-CCCGaaaacaGGUCg -3' miRNA: 3'- gggUCCGGUGGgCCGGcGGGCg-----CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 81092 | 0.66 | 0.512693 |
Target: 5'- uCCCgAGGCuCGCCUacggGGcCCGCuCCGCcgacGCCg -3' miRNA: 3'- -GGG-UCCG-GUGGG----CC-GGCG-GGCGc---CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 124613 | 0.66 | 0.512693 |
Target: 5'- gCCguGGCagccgaacuGCCCGGCCGacucCCCGUugacGGUCa -3' miRNA: 3'- -GGguCCGg--------UGGGCCGGC----GGGCG----CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 124523 | 0.66 | 0.507507 |
Target: 5'- gCCgAGGCa--CCGGCCGUcgucggucuccgagaCC-CGGCCg -3' miRNA: 3'- -GGgUCCGgugGGCCGGCG---------------GGcGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 92198 | 0.66 | 0.504063 |
Target: 5'- gCCCuGGCgaucgCGCCCaagaccaagucGGCCGCCgacgGCGcGCCg -3' miRNA: 3'- -GGGuCCG-----GUGGG-----------CCGGCGGg---CGC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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