miRNA display CGI


Results 41 - 60 of 736 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 5278 0.71 0.25024
Target:  5'- gCCAuGGCCacgGCCUGGuuucCCGCCuCGCcGGCCg -3'
miRNA:   3'- gGGU-CCGG---UGGGCC----GGCGG-GCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 5420 0.75 0.147105
Target:  5'- gCCGGccGCCGcCCCGGUCGCgCCGCuGCCg -3'
miRNA:   3'- gGGUC--CGGU-GGGCCGGCG-GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 5465 0.73 0.197024
Target:  5'- uCCC--GCCGCCguCGGCUgGCCCGCGGUCc -3'
miRNA:   3'- -GGGucCGGUGG--GCCGG-CGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 5508 0.67 0.461928
Target:  5'- gCCgGGGUCGcgagguCCCGGaccgaggucucCCGCCCGCGaCCc -3'
miRNA:   3'- -GGgUCCGGU------GGGCC-----------GGCGGGCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 5518 0.69 0.354962
Target:  5'- aCCGGGCU-CggGGUCGCcgCCGCGGCCu -3'
miRNA:   3'- gGGUCCGGuGggCCGGCG--GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 6315 0.67 0.445598
Target:  5'- gUCgAGGUgGCC--GCCGCCCGCGGg- -3'
miRNA:   3'- -GGgUCCGgUGGgcCGGCGGGCGCCgg -5'
9186 3' -68.4 NC_002512.2 + 6349 0.7 0.289946
Target:  5'- gCgGGGCCGgCgGGCCGCgggCGCGuGCCg -3'
miRNA:   3'- gGgUCCGGUgGgCCGGCGg--GCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 6592 0.75 0.137349
Target:  5'- gCCCGcGGCCccgcGCCCGGuCCcCCCGCGGgCg -3'
miRNA:   3'- -GGGU-CCGG----UGGGCC-GGcGGGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 6947 0.67 0.453723
Target:  5'- -aCGGGCCGCCCgacggggacGGCgucccggagcgCGUCC-CGGCCg -3'
miRNA:   3'- ggGUCCGGUGGG---------CCG-----------GCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 6951 0.69 0.354962
Target:  5'- --gAGGCCGgCCaGGUCguugGCCCGCgGGCCg -3'
miRNA:   3'- gggUCCGGUgGG-CCGG----CGGGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 7077 0.72 0.210474
Target:  5'- cCCCuGGUCGCCaccguGGCCgagacccggGUCCGCGGCUg -3'
miRNA:   3'- -GGGuCCGGUGGg----CCGG---------CGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7207 0.66 0.486998
Target:  5'- cCCgCGGGCCaacgACCUGGCCGgccucuaCCGCuGCg -3'
miRNA:   3'- -GG-GUCCGG----UGGGCCGGCg------GGCGcCGg -5'
9186 3' -68.4 NC_002512.2 + 7232 0.71 0.255626
Target:  5'- cCCCucGGcCCGgCCGGCCG-UCGCGGCg -3'
miRNA:   3'- -GGGu-CC-GGUgGGCCGGCgGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 7303 0.68 0.391119
Target:  5'- -aCAGGCCuccuCCgcgaCGGCgGgCCGCGGCg -3'
miRNA:   3'- ggGUCCGGu---GG----GCCGgCgGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 7355 0.71 0.260553
Target:  5'- cCCCGGcCCACCgcgacggCGGCCGCggcggGCGGCCa -3'
miRNA:   3'- -GGGUCcGGUGG-------GCCGGCGgg---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7424 0.67 0.437555
Target:  5'- aCCgcgaGGGCCGgCgcgaGGuuGgCCGCGGCCc -3'
miRNA:   3'- -GGg---UCCGGUgGg---CCggCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7479 0.67 0.461928
Target:  5'- gCC-GGCC-CCC-GCCGaagCCGCGGCg -3'
miRNA:   3'- gGGuCCGGuGGGcCGGCg--GGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 7496 0.67 0.453723
Target:  5'- gCCGcuccGCCGCgaCGGCCGgCCG-GGCCg -3'
miRNA:   3'- gGGUc---CGGUGg-GCCGGCgGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7541 0.72 0.234645
Target:  5'- --gAGGCCuguCCGGCC-CCCGgGGCCu -3'
miRNA:   3'- gggUCCGGug-GGCCGGcGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7590 0.73 0.180261
Target:  5'- gCCGGGCUacggcgACCCGaCCGUcccgCCGCGGCCc -3'
miRNA:   3'- gGGUCCGG------UGGGCcGGCG----GGCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.