miRNA display CGI


Results 21 - 40 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 3036 0.68 0.391119
Target:  5'- uCCCuGGCgGCCUGcuCCGCCUugacgGCGGCg -3'
miRNA:   3'- -GGGuCCGgUGGGCc-GGCGGG-----CGCCGg -5'
9186 3' -68.4 NC_002512.2 + 3072 0.8 0.064786
Target:  5'- gUCCGGGCCcgcGCCCGcGCCGgguCCCGCcGGCCg -3'
miRNA:   3'- -GGGUCCGG---UGGGC-CGGC---GGGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 3143 0.79 0.071275
Target:  5'- gUCC-GGCCggaGCCCGGUcccgccgucguCGCCCGCGGCCu -3'
miRNA:   3'- -GGGuCCGG---UGGGCCG-----------GCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3239 0.68 0.40624
Target:  5'- aCCGGGCCACgCgggaGGCCaaggagGCCCGCgagaaGGCg -3'
miRNA:   3'- gGGUCCGGUG-Gg---CCGG------CGGGCG-----CCGg -5'
9186 3' -68.4 NC_002512.2 + 3280 0.7 0.27812
Target:  5'- -gCAGGCCGCCagGGagGCCCGggaGGCCa -3'
miRNA:   3'- ggGUCCGGUGGg-CCggCGGGCg--CCGG- -5'
9186 3' -68.4 NC_002512.2 + 3301 0.72 0.219875
Target:  5'- cCCCGGGCCGcgcccuCCUGGCCGgggagCGCGaGCCg -3'
miRNA:   3'- -GGGUCCGGU------GGGCCGGCgg---GCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 3353 0.73 0.180261
Target:  5'- uCUCGGGCgACgccguggucUCGGCCGCcgCCGUGGCCg -3'
miRNA:   3'- -GGGUCCGgUG---------GGCCGGCG--GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3414 0.69 0.320576
Target:  5'- gCCCGGGCC--CCGGCCuccuCCCGCcucgcggGGCUg -3'
miRNA:   3'- -GGGUCCGGugGGCCGGc---GGGCG-------CCGG- -5'
9186 3' -68.4 NC_002512.2 + 3471 0.74 0.15291
Target:  5'- gCCGGGUCcagacucucugagcGCCgGGCCgucGCCCGCGGCg -3'
miRNA:   3'- gGGUCCGG--------------UGGgCCGG---CGGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 3500 0.69 0.334426
Target:  5'- uCCCGGcGCCGuCgUCGGCCcuccacccgaGCCCGCggGGCCc -3'
miRNA:   3'- -GGGUC-CGGU-G-GGCCGG----------CGGGCG--CCGG- -5'
9186 3' -68.4 NC_002512.2 + 3584 0.66 0.490389
Target:  5'- cCCaCAGGCCccgggggucucggggACa-GGCgcagaGCCCGCGGUCg -3'
miRNA:   3'- -GG-GUCCGG---------------UGggCCGg----CGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3633 0.71 0.266681
Target:  5'- gCCgCGGGuCCugCUGGCgGCCCuGCcGCCg -3'
miRNA:   3'- -GG-GUCC-GGugGGCCGgCGGG-CGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 3697 0.67 0.461928
Target:  5'- cCCCgacggAGGUCgACCCGGUCGCuccCCG-GGUCg -3'
miRNA:   3'- -GGG-----UCCGG-UGGGCCGGCG---GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3782 0.67 0.453723
Target:  5'- aCCCGGGCU--UCGGgC-CCCGCGGgCu -3'
miRNA:   3'- -GGGUCCGGugGGCCgGcGGGCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 4080 1.1 0.000401
Target:  5'- uCCCAGGCCACCCGGCCGCCCGCGGCCc -3'
miRNA:   3'- -GGGUCCGGUGGGCCGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 4356 0.76 0.12819
Target:  5'- uCCCgAGGCUGCgCCGGCCggGCCgcggGCGGCCg -3'
miRNA:   3'- -GGG-UCCGGUG-GGCCGG--CGGg---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 4384 0.72 0.210474
Target:  5'- gCCCGGGaCCcCCgCGGCgGCCCcguagaucGCGGUCg -3'
miRNA:   3'- -GGGUCC-GGuGG-GCCGgCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 4461 0.74 0.162558
Target:  5'- cCCCGcGGCCGCucccaccgaucuCCGGCguccucaggauguguCGCCCGCGaGCCg -3'
miRNA:   3'- -GGGU-CCGGUG------------GGCCG---------------GCGGGCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 4870 0.66 0.470211
Target:  5'- gCCaggaGGGCguCCuCGGCgucCGUCuCGCGGCCc -3'
miRNA:   3'- -GGg---UCCGguGG-GCCG---GCGG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 5030 0.71 0.264998
Target:  5'- aCCAGGCCgugGCCauggccguggaGGuauacgcguccagcCCGCCCGCGGCg -3'
miRNA:   3'- gGGUCCGG---UGGg----------CC--------------GGCGGGCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.