Results 21 - 40 of 736 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9186 | 3' | -68.4 | NC_002512.2 | + | 3036 | 0.68 | 0.391119 |
Target: 5'- uCCCuGGCgGCCUGcuCCGCCUugacgGCGGCg -3' miRNA: 3'- -GGGuCCGgUGGGCc-GGCGGG-----CGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3072 | 0.8 | 0.064786 |
Target: 5'- gUCCGGGCCcgcGCCCGcGCCGgguCCCGCcGGCCg -3' miRNA: 3'- -GGGUCCGG---UGGGC-CGGC---GGGCG-CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3143 | 0.79 | 0.071275 |
Target: 5'- gUCC-GGCCggaGCCCGGUcccgccgucguCGCCCGCGGCCu -3' miRNA: 3'- -GGGuCCGG---UGGGCCG-----------GCGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3239 | 0.68 | 0.40624 |
Target: 5'- aCCGGGCCACgCgggaGGCCaaggagGCCCGCgagaaGGCg -3' miRNA: 3'- gGGUCCGGUG-Gg---CCGG------CGGGCG-----CCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3280 | 0.7 | 0.27812 |
Target: 5'- -gCAGGCCGCCagGGagGCCCGggaGGCCa -3' miRNA: 3'- ggGUCCGGUGGg-CCggCGGGCg--CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3301 | 0.72 | 0.219875 |
Target: 5'- cCCCGGGCCGcgcccuCCUGGCCGgggagCGCGaGCCg -3' miRNA: 3'- -GGGUCCGGU------GGGCCGGCgg---GCGC-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3353 | 0.73 | 0.180261 |
Target: 5'- uCUCGGGCgACgccguggucUCGGCCGCcgCCGUGGCCg -3' miRNA: 3'- -GGGUCCGgUG---------GGCCGGCG--GGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3414 | 0.69 | 0.320576 |
Target: 5'- gCCCGGGCC--CCGGCCuccuCCCGCcucgcggGGCUg -3' miRNA: 3'- -GGGUCCGGugGGCCGGc---GGGCG-------CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3471 | 0.74 | 0.15291 |
Target: 5'- gCCGGGUCcagacucucugagcGCCgGGCCgucGCCCGCGGCg -3' miRNA: 3'- gGGUCCGG--------------UGGgCCGG---CGGGCGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3500 | 0.69 | 0.334426 |
Target: 5'- uCCCGGcGCCGuCgUCGGCCcuccacccgaGCCCGCggGGCCc -3' miRNA: 3'- -GGGUC-CGGU-G-GGCCGG----------CGGGCG--CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3584 | 0.66 | 0.490389 |
Target: 5'- cCCaCAGGCCccgggggucucggggACa-GGCgcagaGCCCGCGGUCg -3' miRNA: 3'- -GG-GUCCGG---------------UGggCCGg----CGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3633 | 0.71 | 0.266681 |
Target: 5'- gCCgCGGGuCCugCUGGCgGCCCuGCcGCCg -3' miRNA: 3'- -GG-GUCC-GGugGGCCGgCGGG-CGcCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3697 | 0.67 | 0.461928 |
Target: 5'- cCCCgacggAGGUCgACCCGGUCGCuccCCG-GGUCg -3' miRNA: 3'- -GGG-----UCCGG-UGGGCCGGCG---GGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 3782 | 0.67 | 0.453723 |
Target: 5'- aCCCGGGCU--UCGGgC-CCCGCGGgCu -3' miRNA: 3'- -GGGUCCGGugGGCCgGcGGGCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 4080 | 1.1 | 0.000401 |
Target: 5'- uCCCAGGCCACCCGGCCGCCCGCGGCCc -3' miRNA: 3'- -GGGUCCGGUGGGCCGGCGGGCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 4356 | 0.76 | 0.12819 |
Target: 5'- uCCCgAGGCUGCgCCGGCCggGCCgcggGCGGCCg -3' miRNA: 3'- -GGG-UCCGGUG-GGCCGG--CGGg---CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 4384 | 0.72 | 0.210474 |
Target: 5'- gCCCGGGaCCcCCgCGGCgGCCCcguagaucGCGGUCg -3' miRNA: 3'- -GGGUCC-GGuGG-GCCGgCGGG--------CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 4461 | 0.74 | 0.162558 |
Target: 5'- cCCCGcGGCCGCucccaccgaucuCCGGCguccucaggauguguCGCCCGCGaGCCg -3' miRNA: 3'- -GGGU-CCGGUG------------GGCCG---------------GCGGGCGC-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 4870 | 0.66 | 0.470211 |
Target: 5'- gCCaggaGGGCguCCuCGGCgucCGUCuCGCGGCCc -3' miRNA: 3'- -GGg---UCCGguGG-GCCG---GCGG-GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 5030 | 0.71 | 0.264998 |
Target: 5'- aCCAGGCCgugGCCauggccguggaGGuauacgcguccagcCCGCCCGCGGCg -3' miRNA: 3'- gGGUCCGG---UGGg----------CC--------------GGCGGGCGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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