miRNA display CGI


Results 21 - 40 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 153067 0.67 0.437555
Target:  5'- aUCCugcucGCCGCCC-GCCGUcgCCGCGGaCCu -3'
miRNA:   3'- -GGGuc---CGGUGGGcCGGCG--GGCGCC-GG- -5'
9186 3' -68.4 NC_002512.2 + 152787 0.72 0.205905
Target:  5'- gCCGGGCCuccguCUCGGagGUCCGCGGCg -3'
miRNA:   3'- gGGUCCGGu----GGGCCggCGGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 152658 0.7 0.27812
Target:  5'- gCCCGGGCgCucguucgccuCCCGGUCGCUCGacgcagggGGCCu -3'
miRNA:   3'- -GGGUCCG-Gu---------GGGCCGGCGGGCg-------CCGG- -5'
9186 3' -68.4 NC_002512.2 + 152330 0.69 0.348019
Target:  5'- gCCCguGGGCgACCC-GCCGUCCGCgacguaGGCg -3'
miRNA:   3'- -GGG--UCCGgUGGGcCGGCGGGCG------CCGg -5'
9186 3' -68.4 NC_002512.2 + 152114 0.66 0.521382
Target:  5'- gCCCAcGaGUCAUCCGGUCGCguguccgacaCGCGGgCa -3'
miRNA:   3'- -GGGU-C-CGGUGGGCCGGCGg---------GCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 147759 0.66 0.504063
Target:  5'- aCguGcGCCAgCgCGGCCGUCCcgacucGCGGCUc -3'
miRNA:   3'- gGguC-CGGUgG-GCCGGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 142318 0.69 0.321225
Target:  5'- cCCCAGcgauCC-CCCGGCCGggcgucgggccCUCGCGGCg -3'
miRNA:   3'- -GGGUCc---GGuGGGCCGGC-----------GGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 142274 0.71 0.25024
Target:  5'- gCC-GGCC-CCCGGCCGCggaagaGaCGGCCg -3'
miRNA:   3'- gGGuCCGGuGGGCCGGCGgg----C-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 142000 0.73 0.184329
Target:  5'- gUuuGGGCgAUCCGGCgGCcgucucuuCCGCGGCCg -3'
miRNA:   3'- -GggUCCGgUGGGCCGgCG--------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 141472 0.7 0.27812
Target:  5'- gCgGGGaCCGCCCGaacCCGCCC-CGGCUg -3'
miRNA:   3'- gGgUCC-GGUGGGCc--GGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 141440 0.66 0.495497
Target:  5'- gCCCc-GCCugCUGGUccgggaCGCCUGCGGUUu -3'
miRNA:   3'- -GGGucCGGugGGCCG------GCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 140453 0.66 0.504063
Target:  5'- gCCCGGacGUgACCCcGCCgacGCCCGaGGCCu -3'
miRNA:   3'- -GGGUC--CGgUGGGcCGG---CGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 140284 0.67 0.421722
Target:  5'- gCCCacgucauggAGGCCACCCGGCUcUUCGUGuCCc -3'
miRNA:   3'- -GGG---------UCCGGUGGGCCGGcGGGCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 140065 0.67 0.453723
Target:  5'- uCCUuGGaCACCCgaccgaGGCC-CCCGCcGGCCu -3'
miRNA:   3'- -GGGuCCgGUGGG------CCGGcGGGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 139786 0.67 0.437555
Target:  5'- gUCC-GGCgCACCCuccaGGCCGgCgGgGGCCu -3'
miRNA:   3'- -GGGuCCG-GUGGG----CCGGCgGgCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 139509 0.72 0.205905
Target:  5'- gCCGGGCggcgcgACCCGG-CG-CCGCGGCCg -3'
miRNA:   3'- gGGUCCGg-----UGGGCCgGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 139261 0.66 0.521382
Target:  5'- gCCGGgucgcGCCGCCCGG-CGCgCGgGGgCg -3'
miRNA:   3'- gGGUC-----CGGUGGGCCgGCGgGCgCCgG- -5'
9186 3' -68.4 NC_002512.2 + 139217 0.88 0.017906
Target:  5'- gCCCuGGCCGCCgCGGCCGCcgacuccgagaCCGCGGCCg -3'
miRNA:   3'- -GGGuCCGGUGG-GCCGGCG-----------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 138272 0.68 0.40624
Target:  5'- cCCCgAGGCCGCCguccggcgcgggCGGCgGCgCGgcgcaCGGCCc -3'
miRNA:   3'- -GGG-UCCGGUGG------------GCCGgCGgGC-----GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 138075 0.67 0.429596
Target:  5'- gCCCuGGaaCGCUacgagacggaCGGCCGCCggacgCGCGGCCc -3'
miRNA:   3'- -GGGuCCg-GUGG----------GCCGGCGG-----GCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.