miRNA display CGI


Results 1 - 20 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 229744 0.68 0.40624
Target:  5'- gCCGGcGCCccGCCCGGCU-CCC-CGGCg -3'
miRNA:   3'- gGGUC-CGG--UGGGCCGGcGGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 229595 0.69 0.327776
Target:  5'- gCgUGGGCUGCCCuGGCCcCCCGuCGcGCCg -3'
miRNA:   3'- -GgGUCCGGUGGG-CCGGcGGGC-GC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 227306 0.67 0.413937
Target:  5'- uCCCAcGGCU--CCGGCCGUCCGC--CCg -3'
miRNA:   3'- -GGGU-CCGGugGGCCGGCGGGCGccGG- -5'
9186 3' -68.4 NC_002512.2 + 226461 0.74 0.161095
Target:  5'- cCCCGGuGaUgGCCCGGCCGCgCgcuaacggCGCGGCCg -3'
miRNA:   3'- -GGGUC-C-GgUGGGCCGGCG-G--------GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 226215 0.71 0.266681
Target:  5'- gCCGGGCCAUcaccggggagCCGGagcgaucuuaUCGCcaCCGCGGCCg -3'
miRNA:   3'- gGGUCCGGUG----------GGCC----------GGCG--GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 225610 0.71 0.239751
Target:  5'- gCCGGGaCCcggacaccaauACCCGGauuCCGCCCGCGuCCg -3'
miRNA:   3'- gGGUCC-GG-----------UGGGCC---GGCGGGCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 221481 0.66 0.512693
Target:  5'- cCCCAGGUgGgacaauaauauCCCGGCgaccacaaaugCGCUCGCGaCCg -3'
miRNA:   3'- -GGGUCCGgU-----------GGGCCG-----------GCGGGCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 195175 0.67 0.461928
Target:  5'- uUCCAGGCCGagaCgGGCgaugauacgaCGCCUGgGuGCCg -3'
miRNA:   3'- -GGGUCCGGUg--GgCCG----------GCGGGCgC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 192099 0.69 0.333757
Target:  5'- aCCCuGGCCAauccuuuCCCGGCagaggacccucCGCgucuccguuCUGCGGCCg -3'
miRNA:   3'- -GGGuCCGGU-------GGGCCG-----------GCG---------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 190548 0.66 0.495497
Target:  5'- cCUgAGGCCACgCGuaCCG-CCGCGuGCCa -3'
miRNA:   3'- -GGgUCCGGUGgGCc-GGCgGGCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 190317 0.7 0.283984
Target:  5'- uCCCuuGUCGCCCGucGCCGCCCuuGGCa -3'
miRNA:   3'- -GGGucCGGUGGGC--CGGCGGGcgCCGg -5'
9186 3' -68.4 NC_002512.2 + 178768 0.68 0.369138
Target:  5'- aCCCAGGaagACCUGGCUGCCUGUGu-- -3'
miRNA:   3'- -GGGUCCgg-UGGGCCGGCGGGCGCcgg -5'
9186 3' -68.4 NC_002512.2 + 175716 0.67 0.453723
Target:  5'- aCCCGGGCUgACCCcGCuCGUCaGCGGUUu -3'
miRNA:   3'- -GGGUCCGG-UGGGcCG-GCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 175523 0.67 0.453723
Target:  5'- aCCCGGGCUgACCCcGCuCGUCaGCGGUUu -3'
miRNA:   3'- -GGGUCCGG-UGGGcCG-GCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 170402 0.73 0.197024
Target:  5'- aUCCAGGCCGCUCGagacCCGCUgGCgagGGCCu -3'
miRNA:   3'- -GGGUCCGGUGGGCc---GGCGGgCG---CCGG- -5'
9186 3' -68.4 NC_002512.2 + 155525 0.71 0.244949
Target:  5'- gCUCGaGCCGCCuCGGCU-CCCGCGaGCCg -3'
miRNA:   3'- -GGGUcCGGUGG-GCCGGcGGGCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 155330 0.7 0.289946
Target:  5'- gCCCGGG-CACCCGGCaG-CgGCGGCg -3'
miRNA:   3'- -GGGUCCgGUGGGCCGgCgGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 155280 0.69 0.348019
Target:  5'- gCCgAGGCgGCUCGaGCCgacggaggGCCC-CGGCCu -3'
miRNA:   3'- -GGgUCCGgUGGGC-CGG--------CGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 155236 0.69 0.334426
Target:  5'- gCCCGcGGCCGuCCCGcCCG-UCGCGGCg -3'
miRNA:   3'- -GGGU-CCGGU-GGGCcGGCgGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 153697 0.67 0.413937
Target:  5'- cUCCGGGCCAgguCUCGGaaCGgCCGCuGCCg -3'
miRNA:   3'- -GGGUCCGGU---GGGCCg-GCgGGCGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.