miRNA display CGI


Results 41 - 60 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 137984 0.72 0.209094
Target:  5'- gCCGGGCCcgagcgggccgugcGCCgCGccGCCGCCCGC-GCCg -3'
miRNA:   3'- gGGUCCGG--------------UGG-GC--CGGCGGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 137622 0.76 0.111287
Target:  5'- uUCCGGGagaccgcgcggauCUACCCGGCCGCggcggCCGCGGCg -3'
miRNA:   3'- -GGGUCC-------------GGUGGGCCGGCG-----GGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 137485 0.73 0.200093
Target:  5'- aCCCGcgcggauccgggacGGCCGCCCGcgccgggcgcGCCGCCCaccggGCGGaCCg -3'
miRNA:   3'- -GGGU--------------CCGGUGGGC----------CGGCGGG-----CGCC-GG- -5'
9186 3' -68.4 NC_002512.2 + 137350 0.74 0.164404
Target:  5'- gCCGcGGCCGCCgCGGCCGgguagauCCgCGCGGUCu -3'
miRNA:   3'- gGGU-CCGGUGG-GCCGGC-------GG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 137349 0.66 0.504063
Target:  5'- aCCCc-GCgCGCCUGGgCGCacaCCGgGGCCu -3'
miRNA:   3'- -GGGucCG-GUGGGCCgGCG---GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 137316 0.73 0.184329
Target:  5'- uCCCGGGCgCGgcgccuccucCCUGGCCGUCCcCGGUCg -3'
miRNA:   3'- -GGGUCCG-GU----------GGGCCGGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 137298 0.67 0.437555
Target:  5'- cCUCGGgaccGCCGCCCcucCCGgCCGCGGCg -3'
miRNA:   3'- -GGGUC----CGGUGGGcc-GGCgGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 137249 0.7 0.289946
Target:  5'- gCgCGGGU--CCCGG-CGCCgGCGGCCg -3'
miRNA:   3'- -GgGUCCGguGGGCCgGCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 137205 0.7 0.289946
Target:  5'- gCCCGgugggcGGCgCGCCCGG-CGCggGCGGCCg -3'
miRNA:   3'- -GGGU------CCG-GUGGGCCgGCGggCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 136876 0.66 0.495497
Target:  5'- aCCAcaGCUGCCCGuCCGCCaccgaGaCGGCCa -3'
miRNA:   3'- gGGUc-CGGUGGGCcGGCGGg----C-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 136454 0.72 0.236677
Target:  5'- aCCAGGCCgccggcgucgacgcgAuCCCGGCgacccCGCCgCGCGGCg -3'
miRNA:   3'- gGGUCCGG---------------U-GGGCCG-----GCGG-GCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 136187 0.71 0.261106
Target:  5'- gCgGGGUCGCCgGGaucgcgucgaCGCCgGCGGCCu -3'
miRNA:   3'- gGgUCCGGUGGgCCg---------GCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 135905 0.68 0.376371
Target:  5'- gCCUGGGUCGCgaucaGGCCGCCgGCGaCCc -3'
miRNA:   3'- -GGGUCCGGUGgg---CCGGCGGgCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 135845 0.71 0.25024
Target:  5'- gCCGGGgagcggucguCCACCCGGUugCGCCC-CGGCg -3'
miRNA:   3'- gGGUCC----------GGUGGGCCG--GCGGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 135797 0.7 0.283984
Target:  5'- aCCCAGaaGCCcaGCUCGuGgCGCCUGgCGGCCa -3'
miRNA:   3'- -GGGUC--CGG--UGGGC-CgGCGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 135634 0.72 0.234645
Target:  5'- uCUCGGGgguCCgGGUCGCCgGCGGCCu -3'
miRNA:   3'- -GGGUCCgguGGgCCGGCGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 135515 0.72 0.223249
Target:  5'- gCCCAGGCCucgucgagcgcggcGCggacgaCGGCCucgaggcgGCCCGgGGCCg -3'
miRNA:   3'- -GGGUCCGG--------------UGg-----GCCGG--------CGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 135459 0.69 0.321225
Target:  5'- --gGGGCCcCCCGGcCCGCUgGCGGaCg -3'
miRNA:   3'- gggUCCGGuGGGCC-GGCGGgCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 135441 0.69 0.319279
Target:  5'- uUCCuGGCCGa--GGCCGUCCaccaggcguucgacGCGGCCg -3'
miRNA:   3'- -GGGuCCGGUgggCCGGCGGG--------------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 135406 0.69 0.327776
Target:  5'- aUCCAGGCgaacccCGCCCGGUCGCaggCGuCGGUg -3'
miRNA:   3'- -GGGUCCG------GUGGGCCGGCGg--GC-GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.