miRNA display CGI


Results 61 - 80 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 135311 0.71 0.244949
Target:  5'- uCCCGGaGCCGCCggaggaagagcgUGGCCGCggcgagauccguCCGCcGGCCc -3'
miRNA:   3'- -GGGUC-CGGUGG------------GCCGGCG------------GGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 135279 0.68 0.369138
Target:  5'- gCCUGGGCCGCCUgcuucgGGCCccaguucgccuGUCCGgCGGUCc -3'
miRNA:   3'- -GGGUCCGGUGGG------CCGG-----------CGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 135235 0.79 0.074749
Target:  5'- cCCCGGGCCGCCUcgaGGCCGUcguCCGC-GCCg -3'
miRNA:   3'- -GGGUCCGGUGGG---CCGGCG---GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 134946 0.73 0.188479
Target:  5'- gUCGGGCaGCCCGGCgagCGCCCGCuGGUg -3'
miRNA:   3'- gGGUCCGgUGGGCCG---GCGGGCG-CCGg -5'
9186 3' -68.4 NC_002512.2 + 134693 0.69 0.341173
Target:  5'- -gCGGGCgcuCGCCgGGCUGCCCGacauccugggGGCCg -3'
miRNA:   3'- ggGUCCG---GUGGgCCGGCGGGCg---------CCGG- -5'
9186 3' -68.4 NC_002512.2 + 134558 0.71 0.256169
Target:  5'- cCUgGGGCCGaacauguuccgguaCGGCgGCCCGCGGUCc -3'
miRNA:   3'- -GGgUCCGGUgg------------GCCGgCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 134501 0.77 0.108977
Target:  5'- gCCaggGGGCgGCUCGGCCGCCCcCGGCa -3'
miRNA:   3'- -GGg--UCCGgUGGGCCGGCGGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 134319 0.67 0.421722
Target:  5'- gCCgGGGCCggcGCCgaCGGaCuCG-CCGCGGCCg -3'
miRNA:   3'- -GGgUCCGG---UGG--GCC-G-GCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 134248 0.69 0.362002
Target:  5'- cUCgAGGUCGCCCGGCCGggugCCGacgaGGaCCu -3'
miRNA:   3'- -GGgUCCGGUGGGCCGGCg---GGCg---CC-GG- -5'
9186 3' -68.4 NC_002512.2 + 134245 0.69 0.327776
Target:  5'- gCCgGGGgCGgCCGaGCCGCCCcCuGGCCu -3'
miRNA:   3'- -GGgUCCgGUgGGC-CGGCGGGcG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 134189 0.67 0.445598
Target:  5'- uCCC-GGCCcCCCGuccCCGCCgGaGGCCc -3'
miRNA:   3'- -GGGuCCGGuGGGCc--GGCGGgCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 134187 0.67 0.42094
Target:  5'- aCgCGGGCCGUCgGGCCGCCgcCGUacagcaggagguaGGCCa -3'
miRNA:   3'- -GgGUCCGGUGGgCCGGCGG--GCG-------------CCGG- -5'
9186 3' -68.4 NC_002512.2 + 134142 0.69 0.334426
Target:  5'- gCCCGGGaCCGCcggCCGaGCCGCuCCuCGaGCCg -3'
miRNA:   3'- -GGGUCC-GGUG---GGC-CGGCG-GGcGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 134102 0.73 0.197024
Target:  5'- cCCCGGcGCCuaccGCUCGGaCGCCCccguccagGCGGCCg -3'
miRNA:   3'- -GGGUC-CGG----UGGGCCgGCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 134034 0.7 0.308419
Target:  5'- cCCUGGgaggacgccGCC-CCCGGCCuCCUGCgGGCCg -3'
miRNA:   3'- -GGGUC---------CGGuGGGCCGGcGGGCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 133944 0.66 0.470211
Target:  5'- gUCCGggaggcGGCCGCgaGGUCGgCCacgGCGGCCg -3'
miRNA:   3'- -GGGU------CCGGUGggCCGGCgGG---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 133905 0.72 0.218919
Target:  5'- uCCCGGGCgcuggccUACCuccugcuguacggCGGCgGCCCGaCGGCCc -3'
miRNA:   3'- -GGGUCCG-------GUGG-------------GCCGgCGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 133675 0.82 0.048567
Target:  5'- gCCGcGGCCGCCgUGGCCGaCCuCGCGGCCg -3'
miRNA:   3'- gGGU-CCGGUGG-GCCGGC-GG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 133622 0.67 0.413937
Target:  5'- gCCGGagggaGCCGCgCCGGCgGUgugagCCGgGGCCg -3'
miRNA:   3'- gGGUC-----CGGUG-GGCCGgCG-----GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 133593 0.7 0.302163
Target:  5'- aCCCGaGCgGgCCGGCCuCCUGCGGaCCu -3'
miRNA:   3'- -GGGUcCGgUgGGCCGGcGGGCGCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.