Results 21 - 40 of 736 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9186 | 3' | -68.4 | NC_002512.2 | + | 38449 | 0.66 | 0.524874 |
Target: 5'- cCCCGGGCggagUgaacaugacugucccGCCCgGGCCGCCa-CGGCg -3' miRNA: 3'- -GGGUCCG----G---------------UGGG-CCGGCGGgcGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 107015 | 0.66 | 0.521382 |
Target: 5'- gCCgCGGGCCGagagCCGGaCGCggagcgccgCCGgGGCCg -3' miRNA: 3'- -GG-GUCCGGUg---GGCCgGCG---------GGCgCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 42424 | 0.66 | 0.521382 |
Target: 5'- aCCCuGGCUuUCCGGCUcaagGCCUacaaGGCCg -3' miRNA: 3'- -GGGuCCGGuGGGCCGG----CGGGcg--CCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 86981 | 0.66 | 0.521382 |
Target: 5'- aUCgAGGuCCGgUUGGCCGCCCucucguaguGCGcGCCc -3' miRNA: 3'- -GGgUCC-GGUgGGCCGGCGGG---------CGC-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 106499 | 0.66 | 0.521382 |
Target: 5'- uCCCGGGgagagcgCGCCgCGGuucCCGCgCGCGcGCCg -3' miRNA: 3'- -GGGUCCg------GUGG-GCC---GGCGgGCGC-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 109207 | 0.66 | 0.521382 |
Target: 5'- aCCCGGGCgACCCGaCgGgCaaggGCGGCg -3' miRNA: 3'- -GGGUCCGgUGGGCcGgCgGg---CGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 18945 | 0.66 | 0.521382 |
Target: 5'- gCUCGGGgUGCCC-GCCGCCCaCGaGCUc -3' miRNA: 3'- -GGGUCCgGUGGGcCGGCGGGcGC-CGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 19616 | 0.66 | 0.521382 |
Target: 5'- gCgAGGCCG-CCGaGCC-CCCGaCGGUCc -3' miRNA: 3'- gGgUCCGGUgGGC-CGGcGGGC-GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 29995 | 0.66 | 0.521382 |
Target: 5'- gCCGGGCC-CCCucgcgcGCCGCCa-CGGUa -3' miRNA: 3'- gGGUCCGGuGGGc-----CGGCGGgcGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 47267 | 0.66 | 0.521382 |
Target: 5'- gCCCA-GCaGCUCcGCCGCCagcaagaaGCGGCCc -3' miRNA: 3'- -GGGUcCGgUGGGcCGGCGGg-------CGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 85110 | 0.66 | 0.521382 |
Target: 5'- gCCCGGGCgCGCaa---CGCCCGggaCGGCCg -3' miRNA: 3'- -GGGUCCG-GUGggccgGCGGGC---GCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 18409 | 0.66 | 0.521382 |
Target: 5'- gCUGuGCCucgGCCUGGcCCGCgaCGCGGCCc -3' miRNA: 3'- gGGUcCGG---UGGGCC-GGCGg-GCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 152114 | 0.66 | 0.521382 |
Target: 5'- gCCCAcGaGUCAUCCGGUCGCguguccgacaCGCGGgCa -3' miRNA: 3'- -GGGU-C-CGGUGGGCCGGCGg---------GCGCCgG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 38722 | 0.66 | 0.516161 |
Target: 5'- gCCguGGCgGCCCgggcgGGacagucauguucacuCCGCCCGgGGCg -3' miRNA: 3'- -GGguCCGgUGGG-----CC---------------GGCGGGCgCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 71237 | 0.66 | 0.512693 |
Target: 5'- uCCCGuccucggucgcGGCCGaguaCGGCuucggcgggggCGCCgGCGGCCu -3' miRNA: 3'- -GGGU-----------CCGGUgg--GCCG-----------GCGGgCGCCGG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 73061 | 0.66 | 0.512693 |
Target: 5'- uCCgGGGUCGC-CGG-CGCCCaCGGCg -3' miRNA: 3'- -GGgUCCGGUGgGCCgGCGGGcGCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 73452 | 0.66 | 0.512693 |
Target: 5'- gCCCu-GCCACCUGGCCuacuUCUGCGGgaCCu -3' miRNA: 3'- -GGGucCGGUGGGCCGGc---GGGCGCC--GG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 95077 | 0.66 | 0.512693 |
Target: 5'- gCCCcuGCCugUCGGgCGCCCGgaaGGaCUa -3' miRNA: 3'- -GGGucCGGugGGCCgGCGGGCg--CC-GG- -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 106395 | 0.66 | 0.512693 |
Target: 5'- aCCCAGugcugaaccugaGCCugacgaacgGCCCGGuguuCCGCCCG-GGCg -3' miRNA: 3'- -GGGUC------------CGG---------UGGGCC----GGCGGGCgCCGg -5' |
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9186 | 3' | -68.4 | NC_002512.2 | + | 118790 | 0.66 | 0.512693 |
Target: 5'- uCCCGGGCgCGCacgaGGaCGaCCCGgGGCUc -3' miRNA: 3'- -GGGUCCG-GUGgg--CCgGC-GGGCgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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