miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 5' -55.7 NC_002512.2 + 8430 0.66 0.965405
Target:  5'- uCGGCCUCGGGuGCuacGccGaGAUCCCc -3'
miRNA:   3'- cGUCGGAGCCCuUGu--CuaC-CUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 16823 0.66 0.965405
Target:  5'- cGUAGCCcgCGGGGcuggGCAGGgcGAUCUCGa -3'
miRNA:   3'- -CGUCGGa-GCCCU----UGUCUacCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 226494 0.66 0.965405
Target:  5'- cGUGGuCCUCuGGGGACcuGUGGGcCCCGc -3'
miRNA:   3'- -CGUC-GGAG-CCCUUGucUACCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 137076 0.66 0.965088
Target:  5'- cGC-GCC-CGGGAACAGGcccgcggUGuGcgCCCAg -3'
miRNA:   3'- -CGuCGGaGCCCUUGUCU-------AC-CuaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 73803 0.66 0.962139
Target:  5'- aGCGGCUgCGGGAccuGCAGAUGcaccuGUCCa- -3'
miRNA:   3'- -CGUCGGaGCCCU---UGUCUACc----UAGGgu -5'
9186 5' -55.7 NC_002512.2 + 11491 0.66 0.962139
Target:  5'- cGC-GCC-CGGcGGACGGAggcGGAUaCCCGg -3'
miRNA:   3'- -CGuCGGaGCC-CUUGUCUa--CCUA-GGGU- -5'
9186 5' -55.7 NC_002512.2 + 153491 0.66 0.962139
Target:  5'- cCAGUC-CGGGGACGGcguuccGGGUUCCGg -3'
miRNA:   3'- cGUCGGaGCCCUUGUCua----CCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 14951 0.66 0.96008
Target:  5'- cGCGGCCaCGGGAggacgaaccgcggccGCGG-UGGAcgcgcagaaagUCCCGc -3'
miRNA:   3'- -CGUCGGaGCCCU---------------UGUCuACCU-----------AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 103033 0.66 0.958664
Target:  5'- gGCGGCggCGGGAGaugGGcgGGAuaccUCCCGa -3'
miRNA:   3'- -CGUCGgaGCCCUUg--UCuaCCU----AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 8357 0.66 0.958664
Target:  5'- aGCGGUaggCGGGAGCGccGA-GGAUCCgCGg -3'
miRNA:   3'- -CGUCGga-GCCCUUGU--CUaCCUAGG-GU- -5'
9186 5' -55.7 NC_002512.2 + 2806 0.66 0.958664
Target:  5'- gGCGGCCggCGGGAcccggcGCGGGcgcGGG-CCCGg -3'
miRNA:   3'- -CGUCGGa-GCCCU------UGUCUa--CCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 134157 0.66 0.958664
Target:  5'- cCGGCCggCGGGGACGG--GGAgccgucuuccccUCCCGg -3'
miRNA:   3'- cGUCGGa-GCCCUUGUCuaCCU------------AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 72983 0.66 0.958664
Target:  5'- aCGGCCUUGGGGaucugcggccaGCGGGUGuGcAUCCgCAc -3'
miRNA:   3'- cGUCGGAGCCCU-----------UGUCUAC-C-UAGG-GU- -5'
9186 5' -55.7 NC_002512.2 + 27612 0.66 0.958664
Target:  5'- gGCGGCggCGGGGGCGGAc-GA-CCCAg -3'
miRNA:   3'- -CGUCGgaGCCCUUGUCUacCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 79952 0.66 0.958664
Target:  5'- -gGGCCU-GGGGGgAGAgGGAUCCgGg -3'
miRNA:   3'- cgUCGGAgCCCUUgUCUaCCUAGGgU- -5'
9186 5' -55.7 NC_002512.2 + 63556 0.66 0.957944
Target:  5'- -gAGUgUCGGGAgaACGGGcuggagaaggagGGGUCCCAg -3'
miRNA:   3'- cgUCGgAGCCCU--UGUCUa-----------CCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 45941 0.66 0.957581
Target:  5'- cGCGcGUCcCGGGAGCAGAaccagccgagccgcUgaaGGGUCCCGa -3'
miRNA:   3'- -CGU-CGGaGCCCUUGUCU--------------A---CCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 152935 0.66 0.954977
Target:  5'- cCAGagUCGGGAGCGacuGUGGAUCCgCGa -3'
miRNA:   3'- cGUCggAGCCCUUGUc--UACCUAGG-GU- -5'
9186 5' -55.7 NC_002512.2 + 10210 0.66 0.954977
Target:  5'- -uGGUCUccgucgacgcgCGGGGGaGGGUGGAUCCCc -3'
miRNA:   3'- cgUCGGA-----------GCCCUUgUCUACCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 80816 0.66 0.954977
Target:  5'- cGCGcGCCUCGGcGucgGCGGAgGGGcCCCGu -3'
miRNA:   3'- -CGU-CGGAGCC-Cu--UGUCUaCCUaGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.