Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9186 | 5' | -55.7 | NC_002512.2 | + | 8430 | 0.66 | 0.965405 |
Target: 5'- uCGGCCUCGGGuGCuacGccGaGAUCCCc -3' miRNA: 3'- cGUCGGAGCCCuUGu--CuaC-CUAGGGu -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 226494 | 0.66 | 0.965405 |
Target: 5'- cGUGGuCCUCuGGGGACcuGUGGGcCCCGc -3' miRNA: 3'- -CGUC-GGAG-CCCUUGucUACCUaGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 16823 | 0.66 | 0.965405 |
Target: 5'- cGUAGCCcgCGGGGcuggGCAGGgcGAUCUCGa -3' miRNA: 3'- -CGUCGGa-GCCCU----UGUCUacCUAGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 137076 | 0.66 | 0.965088 |
Target: 5'- cGC-GCC-CGGGAACAGGcccgcggUGuGcgCCCAg -3' miRNA: 3'- -CGuCGGaGCCCUUGUCU-------AC-CuaGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 11491 | 0.66 | 0.962139 |
Target: 5'- cGC-GCC-CGGcGGACGGAggcGGAUaCCCGg -3' miRNA: 3'- -CGuCGGaGCC-CUUGUCUa--CCUA-GGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 153491 | 0.66 | 0.962139 |
Target: 5'- cCAGUC-CGGGGACGGcguuccGGGUUCCGg -3' miRNA: 3'- cGUCGGaGCCCUUGUCua----CCUAGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 73803 | 0.66 | 0.962139 |
Target: 5'- aGCGGCUgCGGGAccuGCAGAUGcaccuGUCCa- -3' miRNA: 3'- -CGUCGGaGCCCU---UGUCUACc----UAGGgu -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 14951 | 0.66 | 0.96008 |
Target: 5'- cGCGGCCaCGGGAggacgaaccgcggccGCGG-UGGAcgcgcagaaagUCCCGc -3' miRNA: 3'- -CGUCGGaGCCCU---------------UGUCuACCU-----------AGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 79952 | 0.66 | 0.958664 |
Target: 5'- -gGGCCU-GGGGGgAGAgGGAUCCgGg -3' miRNA: 3'- cgUCGGAgCCCUUgUCUaCCUAGGgU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 103033 | 0.66 | 0.958664 |
Target: 5'- gGCGGCggCGGGAGaugGGcgGGAuaccUCCCGa -3' miRNA: 3'- -CGUCGgaGCCCUUg--UCuaCCU----AGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 27612 | 0.66 | 0.958664 |
Target: 5'- gGCGGCggCGGGGGCGGAc-GA-CCCAg -3' miRNA: 3'- -CGUCGgaGCCCUUGUCUacCUaGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 134157 | 0.66 | 0.958664 |
Target: 5'- cCGGCCggCGGGGACGG--GGAgccgucuuccccUCCCGg -3' miRNA: 3'- cGUCGGa-GCCCUUGUCuaCCU------------AGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 72983 | 0.66 | 0.958664 |
Target: 5'- aCGGCCUUGGGGaucugcggccaGCGGGUGuGcAUCCgCAc -3' miRNA: 3'- cGUCGGAGCCCU-----------UGUCUAC-C-UAGG-GU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 8357 | 0.66 | 0.958664 |
Target: 5'- aGCGGUaggCGGGAGCGccGA-GGAUCCgCGg -3' miRNA: 3'- -CGUCGga-GCCCUUGU--CUaCCUAGG-GU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 2806 | 0.66 | 0.958664 |
Target: 5'- gGCGGCCggCGGGAcccggcGCGGGcgcGGG-CCCGg -3' miRNA: 3'- -CGUCGGa-GCCCU------UGUCUa--CCUaGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 63556 | 0.66 | 0.957944 |
Target: 5'- -gAGUgUCGGGAgaACGGGcuggagaaggagGGGUCCCAg -3' miRNA: 3'- cgUCGgAGCCCU--UGUCUa-----------CCUAGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 45941 | 0.66 | 0.957581 |
Target: 5'- cGCGcGUCcCGGGAGCAGAaccagccgagccgcUgaaGGGUCCCGa -3' miRNA: 3'- -CGU-CGGaGCCCUUGUCU--------------A---CCUAGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 10210 | 0.66 | 0.954977 |
Target: 5'- -uGGUCUccgucgacgcgCGGGGGaGGGUGGAUCCCc -3' miRNA: 3'- cgUCGGA-----------GCCCUUgUCUACCUAGGGu -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 80816 | 0.66 | 0.954977 |
Target: 5'- cGCGcGCCUCGGcGucgGCGGAgGGGcCCCGu -3' miRNA: 3'- -CGU-CGGAGCC-Cu--UGUCUaCCUaGGGU- -5' |
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9186 | 5' | -55.7 | NC_002512.2 | + | 177748 | 0.66 | 0.954977 |
Target: 5'- cUAGCCaaaGGGGCGGGUGGAUCUg- -3' miRNA: 3'- cGUCGGagcCCUUGUCUACCUAGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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