miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 87104 0.66 0.870146
Target:  5'- gUGC-UGG-GGAGGugGCgGAacauCUCGGAg -3'
miRNA:   3'- -AUGuACCaCCUCCugCGgCU----GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 62723 0.66 0.870146
Target:  5'- cGCGUcgcGGUcgacggccucgcGGGGcACGCCGACCuCGGAg -3'
miRNA:   3'- aUGUA---CCA------------CCUCcUGCGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 47488 0.66 0.870146
Target:  5'- gACAaGGccGGGGaGACGCUGGCCaGGAc -3'
miRNA:   3'- aUGUaCCa-CCUC-CUGCGGCUGGgCCU- -5'
9196 5' -59.5 NC_002512.2 + 121416 0.66 0.863034
Target:  5'- gGCGUGGagGGA-GACGCCcgcggagucGGcCCCGGAg -3'
miRNA:   3'- aUGUACCa-CCUcCUGCGG---------CU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 90954 0.66 0.863034
Target:  5'- -uCGUGGUGGuGG-UGCuCGugCUGGGa -3'
miRNA:   3'- auGUACCACCuCCuGCG-GCugGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 73973 0.66 0.863034
Target:  5'- ----aGcUGGAGGACGCguCGGCgCCGGAc -3'
miRNA:   3'- auguaCcACCUCCUGCG--GCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 130695 0.66 0.855734
Target:  5'- -uCGUGGUGGGGccCGCCG-CCCGc- -3'
miRNA:   3'- auGUACCACCUCcuGCGGCuGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 22057 0.66 0.855734
Target:  5'- cGCcgGGaucgGGA-GACGCCGAgUCGGGg -3'
miRNA:   3'- aUGuaCCa---CCUcCUGCGGCUgGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 198154 0.66 0.855734
Target:  5'- cGCGcGGgccgGGucGGCGCCGGCCggCGGAc -3'
miRNA:   3'- aUGUaCCa---CCucCUGCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 99881 0.66 0.855734
Target:  5'- gUGC-UGGaccgGGAGGAgGCgCGGCCCGu- -3'
miRNA:   3'- -AUGuACCa---CCUCCUgCG-GCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 79739 0.66 0.84825
Target:  5'- gACG-GGcUGGcGGACGCCGACacgagCGGGg -3'
miRNA:   3'- aUGUaCC-ACCuCCUGCGGCUGg----GCCU- -5'
9196 5' -59.5 NC_002512.2 + 2298 0.66 0.84825
Target:  5'- cUGCG-GGUGGcGGGgcucugcuGCGCCGGCgguCCGGAg -3'
miRNA:   3'- -AUGUaCCACC-UCC--------UGCGGCUG---GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 131046 0.66 0.84825
Target:  5'- cGCG-GG-GGAGGACGgCGccGCgCCGGAg -3'
miRNA:   3'- aUGUaCCaCCUCCUGCgGC--UG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 51632 0.66 0.840589
Target:  5'- gACAUGGcgacggacccGGAGaccGCGCCGucCCCGGAg -3'
miRNA:   3'- aUGUACCa---------CCUCc--UGCGGCu-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 94804 0.66 0.840589
Target:  5'- gACGcGGagacgcgGGGGGA-GCCGuCCCGGAg -3'
miRNA:   3'- aUGUaCCa------CCUCCUgCGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 227497 0.66 0.832756
Target:  5'- ----aGGUaGGA-GACGCCgcGACCCGGGg -3'
miRNA:   3'- auguaCCA-CCUcCUGCGG--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 228068 0.67 0.824758
Target:  5'- aGCAggGGUGGGGGgaGCGUgGAUgUGGAa -3'
miRNA:   3'- aUGUa-CCACCUCC--UGCGgCUGgGCCU- -5'
9196 5' -59.5 NC_002512.2 + 48725 0.67 0.816601
Target:  5'- cUACcUGcUGGAGGAC-CUGGCCgCGGAg -3'
miRNA:   3'- -AUGuACcACCUCCUGcGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 170827 0.67 0.816601
Target:  5'- gGCAgcGGcGGcAGcGGCGgCGACCCGGAc -3'
miRNA:   3'- aUGUa-CCaCC-UC-CUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 139980 0.67 0.816601
Target:  5'- cUGCAucgucUGcGUGG-GGuCGCCGACCCaGAc -3'
miRNA:   3'- -AUGU-----AC-CACCuCCuGCGGCUGGGcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.