miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 137204 0.69 0.71283
Target:  5'- cGCccGGUGGGcggcgcgcccggcgcGGGCgGCCGuCCCGGAu -3'
miRNA:   3'- aUGuaCCACCU---------------CCUG-CGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 11631 1.06 0.00328
Target:  5'- gUACAUGGUGGAGGACGCCGACCCGGAc -3'
miRNA:   3'- -AUGUACCACCUCCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 100092 0.76 0.341016
Target:  5'- gGCGgaagGGGGGACuGCCGGCCCGGGa -3'
miRNA:   3'- aUGUaccaCCUCCUG-CGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 58877 0.7 0.621996
Target:  5'- gUACAcUGGcGGAGGAaagcggcguguCGCCGACCgaCGGAg -3'
miRNA:   3'- -AUGU-ACCaCCUCCU-----------GCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 139282 0.7 0.621996
Target:  5'- cGCggGGgcgaaGGGGGGCGcCCGcCCCGGGg -3'
miRNA:   3'- aUGuaCCa----CCUCCUGC-GGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 124771 0.73 0.480068
Target:  5'- gACG-GGUGcGAGGGCuGCCggGACCCGGGg -3'
miRNA:   3'- aUGUaCCAC-CUCCUG-CGG--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 134027 0.71 0.55439
Target:  5'- cGCGcGGcccugGGAGGACGCCGccCCCGGc -3'
miRNA:   3'- aUGUaCCa----CCUCCUGCGGCu-GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 31686 0.7 0.612267
Target:  5'- gACggGGaGGAGGACGCgGACCUGu- -3'
miRNA:   3'- aUGuaCCaCCUCCUGCGgCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 32076 0.69 0.699495
Target:  5'- gGCA-GG-GGGGGuCGCCGauggcgGCCCGGGu -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGGC------UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 45326 0.68 0.737254
Target:  5'- cGCG-GGUcGGAGGGCcguccGCCGGCCCGc- -3'
miRNA:   3'- aUGUaCCA-CCUCCUG-----CGGCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 62723 0.66 0.870146
Target:  5'- cGCGUcgcGGUcgacggccucgcGGGGcACGCCGACCuCGGAg -3'
miRNA:   3'- aUGUA---CCA------------CCUCcUGCGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 31718 0.72 0.544881
Target:  5'- -----cGUGGAGGuccgccggccgGCGCCGACCCGGc -3'
miRNA:   3'- auguacCACCUCC-----------UGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 86121 0.72 0.516694
Target:  5'- gGCGcGGaGGAGGuCGCgGACCUGGAa -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 83211 0.7 0.660915
Target:  5'- cGCggGGcgGGGGGAgCGUCGGuCCCGGGg -3'
miRNA:   3'- aUGuaCCa-CCUCCU-GCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 123272 0.69 0.689907
Target:  5'- cGCAUGucGGAGGACauggagcgccgGCUGGCCCGGu -3'
miRNA:   3'- aUGUACcaCCUCCUG-----------CGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 137049 0.72 0.544881
Target:  5'- gACcgGGgacggccagGGAGGagGCGCCGcGCCCGGGa -3'
miRNA:   3'- aUGuaCCa--------CCUCC--UGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 106630 0.69 0.718508
Target:  5'- cGCcgGGgGGuAGcGGCGCCGGCUCGGc -3'
miRNA:   3'- aUGuaCCaCC-UC-CUGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 153742 0.68 0.737254
Target:  5'- -cCGUGG-GGGGGugGUCGAaUCGGAc -3'
miRNA:   3'- auGUACCaCCUCCugCGGCUgGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 222389 0.71 0.583186
Target:  5'- gGCAcGGUGGcGGugGCCGgguCCGGAa -3'
miRNA:   3'- aUGUaCCACCuCCugCGGCug-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 15101 0.7 0.660915
Target:  5'- gACcagGGgacccGGAGGGCGaCCGGCgCCGGAc -3'
miRNA:   3'- aUGua-CCa----CCUCCUGC-GGCUG-GGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.