miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 2298 0.66 0.84825
Target:  5'- cUGCG-GGUGGcGGGgcucugcuGCGCCGGCgguCCGGAg -3'
miRNA:   3'- -AUGUaCCACC-UCC--------UGCGGCUG---GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 2806 0.68 0.746507
Target:  5'- gGCGgccGGcgGGAcccggcgcGGGCGCgGGCCCGGAc -3'
miRNA:   3'- aUGUa--CCa-CCU--------CCUGCGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 7084 0.71 0.58222
Target:  5'- cGCAUGGUGGAGccuaucaagguucGACGCCGgcaGCuuGGu -3'
miRNA:   3'- aUGUACCACCUC-------------CUGCGGC---UGggCCu -5'
9196 5' -59.5 NC_002512.2 + 10449 0.68 0.755669
Target:  5'- cACggGGgcgcGGAGGAggccgcCGCCGcCCCGGGc -3'
miRNA:   3'- aUGuaCCa---CCUCCU------GCGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 11631 1.06 0.00328
Target:  5'- gUACAUGGUGGAGGACGCCGACCCGGAc -3'
miRNA:   3'- -AUGUACCACCUCCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 15101 0.7 0.660915
Target:  5'- gACcagGGgacccGGAGGGCGaCCGGCgCCGGAc -3'
miRNA:   3'- aUGua-CCa----CCUCCUGC-GGCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 22057 0.66 0.855734
Target:  5'- cGCcgGGaucgGGA-GACGCCGAgUCGGGg -3'
miRNA:   3'- aUGuaCCa---CCUcCUGCGGCUgGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 29395 0.68 0.755669
Target:  5'- ----cGGUcGGAGGACGCCG-CCCu-- -3'
miRNA:   3'- auguaCCA-CCUCCUGCGGCuGGGccu -5'
9196 5' -59.5 NC_002512.2 + 31686 0.7 0.612267
Target:  5'- gACggGGaGGAGGACGCgGACCUGu- -3'
miRNA:   3'- aUGuaCCaCCUCCUGCGgCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 31718 0.72 0.544881
Target:  5'- -----cGUGGAGGuccgccggccgGCGCCGACCCGGc -3'
miRNA:   3'- auguacCACCUCC-----------UGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 32076 0.69 0.699495
Target:  5'- gGCA-GG-GGGGGuCGCCGauggcgGCCCGGGu -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGGC------UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 43370 0.68 0.746507
Target:  5'- cGCAga--GGucGACGCUGGCCCGGAc -3'
miRNA:   3'- aUGUaccaCCucCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 45326 0.68 0.737254
Target:  5'- cGCG-GGUcGGAGGGCcguccGCCGGCCCGc- -3'
miRNA:   3'- aUGUaCCA-CCUCCUG-----CGGCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 47488 0.66 0.870146
Target:  5'- gACAaGGccGGGGaGACGCUGGCCaGGAc -3'
miRNA:   3'- aUGUaCCa-CCUC-CUGCGGCUGGgCCU- -5'
9196 5' -59.5 NC_002512.2 + 48725 0.67 0.816601
Target:  5'- cUACcUGcUGGAGGAC-CUGGCCgCGGAg -3'
miRNA:   3'- -AUGuACcACCUCCUGcGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 51632 0.66 0.840589
Target:  5'- gACAUGGcgacggacccGGAGaccGCGCCGucCCCGGAg -3'
miRNA:   3'- aUGUACCa---------CCUCc--UGCGGCu-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 58877 0.7 0.621996
Target:  5'- gUACAcUGGcGGAGGAaagcggcguguCGCCGACCgaCGGAg -3'
miRNA:   3'- -AUGU-ACCaCCUCCU-----------GCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 62723 0.66 0.870146
Target:  5'- cGCGUcgcGGUcgacggccucgcGGGGcACGCCGACCuCGGAg -3'
miRNA:   3'- aUGUA---CCA------------CCUCcUGCGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 68000 0.67 0.807454
Target:  5'- cGCGaGGagagGGAGcGACGagacgcaCCGACCCGGGa -3'
miRNA:   3'- aUGUaCCa---CCUC-CUGC-------GGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 73973 0.66 0.863034
Target:  5'- ----aGcUGGAGGACGCguCGGCgCCGGAc -3'
miRNA:   3'- auguaCcACCUCCUGCG--GCUG-GGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.