miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 11631 1.06 0.00328
Target:  5'- gUACAUGGUGGAGGACGCCGACCCGGAc -3'
miRNA:   3'- -AUGUACCACCUCCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 100092 0.76 0.341016
Target:  5'- gGCGgaagGGGGGACuGCCGGCCCGGGa -3'
miRNA:   3'- aUGUaccaCCUCCUG-CGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 123850 0.75 0.386663
Target:  5'- cUGCGUGGcgGaGAGGACGCCGcaccCCCGGc -3'
miRNA:   3'- -AUGUACCa-C-CUCCUGCGGCu---GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 226467 0.74 0.436157
Target:  5'- cGCGaGGcgGGAGGAgGCCGggGCCCGGGc -3'
miRNA:   3'- aUGUaCCa-CCUCCUgCGGC--UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 75548 0.73 0.45345
Target:  5'- -cCGUGGcGGAGGACGaCGACgCGGAc -3'
miRNA:   3'- auGUACCaCCUCCUGCgGCUGgGCCU- -5'
9196 5' -59.5 NC_002512.2 + 124771 0.73 0.480068
Target:  5'- gACG-GGUGcGAGGGCuGCCggGACCCGGGg -3'
miRNA:   3'- aUGUaCCAC-CUCCUG-CGG--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 185037 0.73 0.492749
Target:  5'- ----cGG-GGAgagcccuaggauccuGGACGCCGACCCGGGc -3'
miRNA:   3'- auguaCCaCCU---------------CCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 86121 0.72 0.516694
Target:  5'- gGCGcGGaGGAGGuCGCgGACCUGGAa -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 137049 0.72 0.544881
Target:  5'- gACcgGGgacggccagGGAGGagGCGCCGcGCCCGGGa -3'
miRNA:   3'- aUGuaCCa--------CCUCC--UGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 31718 0.72 0.544881
Target:  5'- -----cGUGGAGGuccgccggccgGCGCCGACCCGGc -3'
miRNA:   3'- auguacCACCUCC-----------UGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 134027 0.71 0.55439
Target:  5'- cGCGcGGcccugGGAGGACGCCGccCCCGGc -3'
miRNA:   3'- aUGUaCCa----CCUCCUGCGGCu-GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 7084 0.71 0.58222
Target:  5'- cGCAUGGUGGAGccuaucaagguucGACGCCGgcaGCuuGGu -3'
miRNA:   3'- aUGUACCACCUC-------------CUGCGGC---UGggCCu -5'
9196 5' -59.5 NC_002512.2 + 222389 0.71 0.583186
Target:  5'- gGCAcGGUGGcGGugGCCGgguCCGGAa -3'
miRNA:   3'- aUGUaCCACCuCCugCGGCug-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 104137 0.71 0.592856
Target:  5'- cACGgacgGGcUGGGGGACG-CGACgCCGGAc -3'
miRNA:   3'- aUGUa---CC-ACCUCCUGCgGCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 228283 0.71 0.602551
Target:  5'- cGgGUGGgagagGGAGGACGg-GACCCGGGg -3'
miRNA:   3'- aUgUACCa----CCUCCUGCggCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 31686 0.7 0.612267
Target:  5'- gACggGGaGGAGGACGCgGACCUGu- -3'
miRNA:   3'- aUGuaCCaCCUCCUGCGgCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 58877 0.7 0.621996
Target:  5'- gUACAcUGGcGGAGGAaagcggcguguCGCCGACCgaCGGAg -3'
miRNA:   3'- -AUGU-ACCaCCUCCU-----------GCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 201731 0.7 0.621996
Target:  5'- cGCggGG-GGAgacgacggcugGGGCGCCGAuCCCGGGg -3'
miRNA:   3'- aUGuaCCaCCU-----------CCUGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 139282 0.7 0.621996
Target:  5'- cGCggGGgcgaaGGGGGGCGcCCGcCCCGGGg -3'
miRNA:   3'- aUGuaCCa----CCUCCUGC-GGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 218095 0.7 0.631733
Target:  5'- -cCGUGG-GGAagcGGGCGUCGcGCCCGGGg -3'
miRNA:   3'- auGUACCaCCU---CCUGCGGC-UGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.