miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 207773 0.67 0.808293
Target:  5'- -cCGUGGUGGuugcGGGACGgCGucgucuCCCGGc -3'
miRNA:   3'- auGUACCACC----UCCUGCgGCu-----GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 196493 0.67 0.808293
Target:  5'- cGCcUGGcUGGcGGACGCCGGguucgaCCGGGa -3'
miRNA:   3'- aUGuACC-ACCuCCUGCGGCUg-----GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 204725 0.67 0.808293
Target:  5'- gGCccGGggcGGGGGGC-CgGACCCGGGu -3'
miRNA:   3'- aUGuaCCa--CCUCCUGcGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 68000 0.67 0.807454
Target:  5'- cGCGaGGagagGGAGcGACGagacgcaCCGACCCGGGa -3'
miRNA:   3'- aUGUaCCa---CCUC-CUGC-------GGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 102858 0.67 0.805772
Target:  5'- cGCGUaucccgaccgGGGGGACGCCuacggggGACCCGGGu -3'
miRNA:   3'- aUGUAcca-------CCUCCUGCGG-------CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 136069 0.67 0.79984
Target:  5'- uUGCGUGGguccGGccGGGGgGCCGGCUgCGGAc -3'
miRNA:   3'- -AUGUACCa---CC--UCCUgCGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 98560 0.67 0.79125
Target:  5'- cGCAgagGGUcGGAcGGcCGuuGAUCCGGAg -3'
miRNA:   3'- aUGUa--CCA-CCU-CCuGCggCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 139175 0.68 0.773688
Target:  5'- cACAUGGUGGAccccugucACGCCGACgCCGu- -3'
miRNA:   3'- aUGUACCACCUcc------UGCGGCUG-GGCcu -5'
9196 5' -59.5 NC_002512.2 + 29395 0.68 0.755669
Target:  5'- ----cGGUcGGAGGACGCCG-CCCu-- -3'
miRNA:   3'- auguaCCA-CCUCCUGCGGCuGGGccu -5'
9196 5' -59.5 NC_002512.2 + 80912 0.68 0.755669
Target:  5'- cAgGUGGUGGGucgcgcGGGCGCCcuCCCGGc -3'
miRNA:   3'- aUgUACCACCU------CCUGCGGcuGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 219827 0.68 0.755669
Target:  5'- gACAgggGGUcGGucGGGGgGuCCGGCCCGGGg -3'
miRNA:   3'- aUGUa--CCA-CC--UCCUgC-GGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 10449 0.68 0.755669
Target:  5'- cACggGGgcgcGGAGGAggccgcCGCCGcCCCGGGc -3'
miRNA:   3'- aUGuaCCa---CCUCCU------GCGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 129172 0.68 0.755669
Target:  5'- cUGCGUGGUGGucuuccaGCaGACCCGGAc -3'
miRNA:   3'- -AUGUACCACCuccug--CGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 187022 0.68 0.746507
Target:  5'- gGCGUGGaggaGGAGGACGagGACCgGGc -3'
miRNA:   3'- aUGUACCa---CCUCCUGCggCUGGgCCu -5'
9196 5' -59.5 NC_002512.2 + 161187 0.68 0.746507
Target:  5'- aACcUGGUGG-GGACGgUGuGCCUGGAg -3'
miRNA:   3'- aUGuACCACCuCCUGCgGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 43370 0.68 0.746507
Target:  5'- cGCAga--GGucGACGCUGGCCCGGAc -3'
miRNA:   3'- aUGUaccaCCucCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 2806 0.68 0.746507
Target:  5'- gGCGgccGGcgGGAcccggcgcGGGCGCgGGCCCGGAc -3'
miRNA:   3'- aUGUa--CCa-CCU--------CCUGCGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 153742 0.68 0.737254
Target:  5'- -cCGUGG-GGGGGugGUCGAaUCGGAc -3'
miRNA:   3'- auGUACCaCCUCCugCGGCUgGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 45326 0.68 0.737254
Target:  5'- cGCG-GGUcGGAGGGCcguccGCCGGCCCGc- -3'
miRNA:   3'- aUGUaCCA-CCUCCUG-----CGGCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 160724 0.68 0.731662
Target:  5'- gACAUcGG-GGGGGauuucggggggaacgGCGCCGGcCCCGGGc -3'
miRNA:   3'- aUGUA-CCaCCUCC---------------UGCGGCU-GGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.