Results 1 - 20 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9205 | 3' | -60.5 | NC_002512.2 | + | 10771 | 0.66 | 0.857693 |
Target: 5'- uCGGccCCGCCGCGGUagGCGUaguagCGG-CCGa -3' miRNA: 3'- -GCCu-GGCGGUGCUA--CGCGa----GCCuGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 169986 | 0.66 | 0.850411 |
Target: 5'- aCGucCCGCuCGCcGUGCGC-CGGaACCGg -3' miRNA: 3'- -GCcuGGCG-GUGcUACGCGaGCC-UGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 121566 | 0.66 | 0.850411 |
Target: 5'- -cGACCGCC-CGccGCGCgccgccaUGGACCa -3' miRNA: 3'- gcCUGGCGGuGCuaCGCGa------GCCUGGc -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 174072 | 0.66 | 0.850411 |
Target: 5'- aGGAucuucaCCGCCGCGcggaugGCGCUCgauaGGGCuCGg -3' miRNA: 3'- gCCU------GGCGGUGCua----CGCGAG----CCUG-GC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 165385 | 0.66 | 0.850411 |
Target: 5'- uGGcCCGCaagguCGggGCGCUCaugguccaggaGGGCCGg -3' miRNA: 3'- gCCuGGCGgu---GCuaCGCGAG-----------CCUGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 185854 | 0.66 | 0.842957 |
Target: 5'- gGGAgCGgUACGucgaggaggGCGcCUCGGGCCGc -3' miRNA: 3'- gCCUgGCgGUGCua-------CGC-GAGCCUGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 122736 | 0.66 | 0.842957 |
Target: 5'- cCGGGCgGaaaCGCGcugaggggGCGCcCGGGCCGg -3' miRNA: 3'- -GCCUGgCg--GUGCua------CGCGaGCCUGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 221687 | 0.66 | 0.842957 |
Target: 5'- gCGGAcacCCGCC-CGgcGaCGCUCGG-CCu -3' miRNA: 3'- -GCCU---GGCGGuGCuaC-GCGAGCCuGGc -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 150072 | 0.66 | 0.842957 |
Target: 5'- gGGACCGCCGCcgc-CGCcgUCGGGCg- -3' miRNA: 3'- gCCUGGCGGUGcuacGCG--AGCCUGgc -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 170167 | 0.66 | 0.856973 |
Target: 5'- cCGGAucaCCGCCAUG-UGCGCcagcgugauguucUCGG-CCa -3' miRNA: 3'- -GCCU---GGCGGUGCuACGCG-------------AGCCuGGc -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 186485 | 0.66 | 0.856973 |
Target: 5'- gCGGAUCGCCgaguucguccacuACGcgGcCGUcCGGGCCa -3' miRNA: 3'- -GCCUGGCGG-------------UGCuaC-GCGaGCCUGGc -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 94585 | 0.66 | 0.857693 |
Target: 5'- gGGACCGCCG-GAcagGCGaaCUgGGGCCc -3' miRNA: 3'- gCCUGGCGGUgCUa--CGC--GAgCCUGGc -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 149246 | 0.66 | 0.857693 |
Target: 5'- cCGGcGCCGCCGCc--GCGgaCGG-CCGg -3' miRNA: 3'- -GCC-UGGCGGUGcuaCGCgaGCCuGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 226407 | 0.66 | 0.857693 |
Target: 5'- gGGAcCCGUCGCGuccGCGuCUCcGGACgCGg -3' miRNA: 3'- gCCU-GGCGGUGCua-CGC-GAG-CCUG-GC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 191693 | 0.66 | 0.857693 |
Target: 5'- cCGGACCGUgCugGAgGCGCU-GGAUa- -3' miRNA: 3'- -GCCUGGCG-GugCUaCGCGAgCCUGgc -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 114395 | 0.66 | 0.857693 |
Target: 5'- cCGGcgacCCGCCACuc-GCGCUCaucucGACCGg -3' miRNA: 3'- -GCCu---GGCGGUGcuaCGCGAGc----CUGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 110800 | 0.66 | 0.857693 |
Target: 5'- aGGuCCGCCGCGAUGUuCUCcuccCCGa -3' miRNA: 3'- gCCuGGCGGUGCUACGcGAGccu-GGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 181951 | 0.66 | 0.857693 |
Target: 5'- uCGGGCUGUgACGGUGUa--UGGACCGc -3' miRNA: 3'- -GCCUGGCGgUGCUACGcgaGCCUGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 147028 | 0.66 | 0.857693 |
Target: 5'- aCGGucaacguCUuCCugGAccUGCGCgCGGACCGg -3' miRNA: 3'- -GCCu------GGcGGugCU--ACGCGaGCCUGGC- -5' |
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9205 | 3' | -60.5 | NC_002512.2 | + | 124322 | 0.66 | 0.857693 |
Target: 5'- gGGGCCGCgGCGGacGUGCUgCGG-CUGu -3' miRNA: 3'- gCCUGGCGgUGCUa-CGCGA-GCCuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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