miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 2291 0.67 0.806617
Target:  5'- cCGG-CCGCUGCGGguggcggggcucugcUGCGCcggCGGuCCGg -3'
miRNA:   3'- -GCCuGGCGGUGCU---------------ACGCGa--GCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 3196 0.66 0.850411
Target:  5'- --cGCCGCCGCGGgcgacggcccgGCGCUCagagagucuGGACCc -3'
miRNA:   3'- gccUGGCGGUGCUa----------CGCGAG---------CCUGGc -5'
9205 3' -60.5 NC_002512.2 + 3381 0.72 0.516154
Target:  5'- aGGGCCGCCagcaggacccgcgGCGAggggaGCGCcCGGGCCc -3'
miRNA:   3'- gCCUGGCGG-------------UGCUa----CGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 6322 0.66 0.827555
Target:  5'- uGGccGCCGcCCGCGGggggaccggGCGCg-GGGCCGg -3'
miRNA:   3'- gCC--UGGC-GGUGCUa--------CGCGagCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 7322 0.68 0.733263
Target:  5'- gCGGGCCGCgGCGGgaCGgUCGGgucGCCGu -3'
miRNA:   3'- -GCCUGGCGgUGCUacGCgAGCC---UGGC- -5'
9205 3' -60.5 NC_002512.2 + 7403 0.66 0.827555
Target:  5'- gCGGccACCGCCACGuugacgaccGCGa--GGGCCGg -3'
miRNA:   3'- -GCC--UGGCGGUGCua-------CGCgagCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 10465 0.66 0.857693
Target:  5'- aGGccGCCGCCGCcccgggcGUGgGCgucgcggCGGGCCGa -3'
miRNA:   3'- gCC--UGGCGGUGc------UACgCGa------GCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 10771 0.66 0.857693
Target:  5'- uCGGccCCGCCGCGGUagGCGUaguagCGG-CCGa -3'
miRNA:   3'- -GCCu-GGCGGUGCUA--CGCGa----GCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 13160 0.68 0.751381
Target:  5'- gCGGACCugcgcGCCAUGAuccaccUGCaGCUCgaGGACCu -3'
miRNA:   3'- -GCCUGG-----CGGUGCU------ACG-CGAG--CCUGGc -5'
9205 3' -60.5 NC_002512.2 + 13457 0.68 0.751381
Target:  5'- aGGGCgGCgGCGAgccugGCGUcccCGGACCu -3'
miRNA:   3'- gCCUGgCGgUGCUa----CGCGa--GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 16936 0.68 0.760307
Target:  5'- cCGGAggCGCCGuaggGCGaCUCGGACCGg -3'
miRNA:   3'- -GCCUg-GCGGUgcuaCGC-GAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 18119 0.71 0.582195
Target:  5'- cCGGGCCuCCACGuccucccgcaGCGCcCGGGCCGc -3'
miRNA:   3'- -GCCUGGcGGUGCua--------CGCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 18572 1.08 0.002686
Target:  5'- cCGGACCGCCACGAUGCGCUCGGACCGc -3'
miRNA:   3'- -GCCUGGCGGUGCUACGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 18702 0.67 0.784751
Target:  5'- gCGGGCaccccgagcaggGCgGCGAcGCGCUCGGGCa- -3'
miRNA:   3'- -GCCUGg-----------CGgUGCUaCGCGAGCCUGgc -5'
9205 3' -60.5 NC_002512.2 + 19189 0.69 0.666891
Target:  5'- gCGGGugaucucCCGCgGCGccuugccguUGCGCUUGGACCa -3'
miRNA:   3'- -GCCU-------GGCGgUGCu--------ACGCGAGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 19359 0.66 0.824399
Target:  5'- cCGGACCGUCGgGGgcucggcggccucGCGCucgcgUCGGGCCc -3'
miRNA:   3'- -GCCUGGCGGUgCUa------------CGCG-----AGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 20683 0.66 0.842957
Target:  5'- aCGGGCCGCagGCGc--CGCUCGGucuCCu -3'
miRNA:   3'- -GCCUGGCGg-UGCuacGCGAGCCu--GGc -5'
9205 3' -60.5 NC_002512.2 + 22408 0.66 0.850411
Target:  5'- aCGGG-CGCCgagACGA-GCGaCUCGGACgCGc -3'
miRNA:   3'- -GCCUgGCGG---UGCUaCGC-GAGCCUG-GC- -5'
9205 3' -60.5 NC_002512.2 + 28008 0.68 0.742364
Target:  5'- aCGGagaaGCCGCCGCc--GUcCUCGGACCGc -3'
miRNA:   3'- -GCC----UGGCGGUGcuaCGcGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 29169 0.67 0.809083
Target:  5'- uCGGACCGCCGgGcgGCaGCcCGacgccacccgagacGACCGa -3'
miRNA:   3'- -GCCUGGCGGUgCuaCG-CGaGC--------------CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.