miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 18572 1.08 0.002686
Target:  5'- cCGGACCGCCACGAUGCGCUCGGACCGc -3'
miRNA:   3'- -GCCUGGCGGUGCUACGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 143961 0.79 0.227399
Target:  5'- aGGGCCuCCACGAcGCGCUUGGACUu -3'
miRNA:   3'- gCCUGGcGGUGCUaCGCGAGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 96299 0.78 0.254504
Target:  5'- gCGGGCCGCCGCc--GCGggCGGGCCGg -3'
miRNA:   3'- -GCCUGGCGGUGcuaCGCgaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 85264 0.77 0.266068
Target:  5'- gCGuGGCCGCCACGuccaGCGCggcgCGGACCu -3'
miRNA:   3'- -GC-CUGGCGGUGCua--CGCGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 149150 0.77 0.278054
Target:  5'- gGGACCGCCGCGGggccgGUGCcgcccgCGGGCCc -3'
miRNA:   3'- gCCUGGCGGUGCUa----CGCGa-----GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 123426 0.76 0.309891
Target:  5'- aGGucCCGCCGCccGUGCGCagUCGGACCGa -3'
miRNA:   3'- gCCu-GGCGGUGc-UACGCG--AGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 186973 0.76 0.316583
Target:  5'- cCGGGCCGUCcugGCGGUGCGCaUGGGCUa -3'
miRNA:   3'- -GCCUGGCGG---UGCUACGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 145514 0.76 0.316583
Target:  5'- gGGGCUGCUcCGGcucUGCGCgUCGGGCCGg -3'
miRNA:   3'- gCCUGGCGGuGCU---ACGCG-AGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 126422 0.76 0.3289
Target:  5'- cCGaGACCcgaGCCGCGuccucggacccGCGCUCGGACCGg -3'
miRNA:   3'- -GC-CUGG---CGGUGCua---------CGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 36989 0.75 0.349481
Target:  5'- uGGACCGCCGCGGagcgcgacgGCGCUUauaugcguccccggGGACCa -3'
miRNA:   3'- gCCUGGCGGUGCUa--------CGCGAG--------------CCUGGc -5'
9205 3' -60.5 NC_002512.2 + 220367 0.75 0.351662
Target:  5'- cCGuGGCCGCCGcCGccGUGCUgGGGCCGg -3'
miRNA:   3'- -GC-CUGGCGGU-GCuaCGCGAgCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 38928 0.75 0.359
Target:  5'- gGGGCCGCCGCGGcgggcgcccgcgUGCGCcCGGGuCUGg -3'
miRNA:   3'- gCCUGGCGGUGCU------------ACGCGaGCCU-GGC- -5'
9205 3' -60.5 NC_002512.2 + 89607 0.75 0.359
Target:  5'- gGGAaCGuCCGCGggGCGCUCGGgcGCCGa -3'
miRNA:   3'- gCCUgGC-GGUGCuaCGCGAGCC--UGGC- -5'
9205 3' -60.5 NC_002512.2 + 74562 0.75 0.363454
Target:  5'- uGGuCCGCCGCGAccugggcgcucugGUGCUCGaGGCCGg -3'
miRNA:   3'- gCCuGGCGGUGCUa------------CGCGAGC-CUGGC- -5'
9205 3' -60.5 NC_002512.2 + 184395 0.75 0.373996
Target:  5'- gCGuGGCCGCCGcCGGgggGCGCUCGG-CCu -3'
miRNA:   3'- -GC-CUGGCGGU-GCUa--CGCGAGCCuGGc -5'
9205 3' -60.5 NC_002512.2 + 87335 0.75 0.381651
Target:  5'- uGGACCGauCCGCGGUGCGCggucgaCGGGgCGa -3'
miRNA:   3'- gCCUGGC--GGUGCUACGCGa-----GCCUgGC- -5'
9205 3' -60.5 NC_002512.2 + 132076 0.74 0.404435
Target:  5'- aGGAgcCCGUCGacggagcCGGaGCGCUCGGACCGg -3'
miRNA:   3'- gCCU--GGCGGU-------GCUaCGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 91578 0.74 0.405235
Target:  5'- gCGGAuCCGCUACGA-GCGCgcgCGGcACCa -3'
miRNA:   3'- -GCCU-GGCGGUGCUaCGCGa--GCC-UGGc -5'
9205 3' -60.5 NC_002512.2 + 97147 0.74 0.405235
Target:  5'- gGGACgaCGCCGCGcUGCGCcugcggcagCGGGCCGa -3'
miRNA:   3'- gCCUG--GCGGUGCuACGCGa--------GCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 158316 0.74 0.421459
Target:  5'- gCGGucguCCGgCGCGAguccGCGCUCcGGACCGu -3'
miRNA:   3'- -GCCu---GGCgGUGCUa---CGCGAG-CCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.