miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 158316 0.74 0.421459
Target:  5'- gCGGucguCCGgCGCGAguccGCGCUCcGGACCGu -3'
miRNA:   3'- -GCCu---GGCgGUGCUa---CGCGAG-CCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 81042 0.73 0.455046
Target:  5'- cCGGcguuCCGgCAgCGGUGCGCcCGGACCGc -3'
miRNA:   3'- -GCCu---GGCgGU-GCUACGCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 173713 0.73 0.463668
Target:  5'- gGGACUGcCCGCGAccGUGCUCGGcaACCa -3'
miRNA:   3'- gCCUGGC-GGUGCUa-CGCGAGCC--UGGc -5'
9205 3' -60.5 NC_002512.2 + 222530 0.73 0.463668
Target:  5'- gCGGccGCCGUCGCGGUGgGC-CGGGCUa -3'
miRNA:   3'- -GCC--UGGCGGUGCUACgCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 131088 0.73 0.471499
Target:  5'- cCGG-CCGCCGggguaccuggacgUGGUGCGC-CGGGCCa -3'
miRNA:   3'- -GCCuGGCGGU-------------GCUACGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 155963 0.73 0.479398
Target:  5'- -aGGCCGUCGCGuuucuccgacaGCGCUUGGACCGc -3'
miRNA:   3'- gcCUGGCGGUGCua---------CGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 49657 0.73 0.481161
Target:  5'- uCGGACC-CCACGuacgGgGCgCGGGCCGg -3'
miRNA:   3'- -GCCUGGcGGUGCua--CgCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 135237 0.73 0.484699
Target:  5'- cCGGGCCGCCucgaggccgucguccGCGccGCGCUCgacgaggccuGGGCCGc -3'
miRNA:   3'- -GCCUGGCGG---------------UGCuaCGCGAG----------CCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 103110 0.72 0.505272
Target:  5'- gCGGcacgcgucgccgccGCCGCCGCGccccgagGCGuCUCGGGCCa -3'
miRNA:   3'- -GCC--------------UGGCGGUGCua-----CGC-GAGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 136424 0.72 0.507983
Target:  5'- aGGucuCCGCCACGAUcccgGCGCUCGaGcGCUGg -3'
miRNA:   3'- gCCu--GGCGGUGCUA----CGCGAGC-C-UGGC- -5'
9205 3' -60.5 NC_002512.2 + 3381 0.72 0.516154
Target:  5'- aGGGCCGCCagcaggacccgcgGCGAggggaGCGCcCGGGCCc -3'
miRNA:   3'- gCCUGGCGG-------------UGCUa----CGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 108423 0.72 0.517066
Target:  5'- gGGACgGCgGCGG-GCGCggggCGGACCc -3'
miRNA:   3'- gCCUGgCGgUGCUaCGCGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 222637 0.72 0.525294
Target:  5'- aCGGAcgccgcuCCGCCGCGAcgGCcgGC-CGGGCCGa -3'
miRNA:   3'- -GCCU-------GGCGGUGCUa-CG--CGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 91887 0.72 0.526212
Target:  5'- gCGGGCgGCgGCGcgGCGCacggcccgcUCGGGCCc -3'
miRNA:   3'- -GCCUGgCGgUGCuaCGCG---------AGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 78855 0.72 0.535418
Target:  5'- aCGGGCCGCCGCcucgaGGUG-GCUCGcgucgccauggaGACCGa -3'
miRNA:   3'- -GCCUGGCGGUG-----CUACgCGAGC------------CUGGC- -5'
9205 3' -60.5 NC_002512.2 + 170900 0.72 0.535418
Target:  5'- aCGG-CCGCCugGAcacgcUGCGCUuCGaGCCGa -3'
miRNA:   3'- -GCCuGGCGGugCU-----ACGCGA-GCcUGGC- -5'
9205 3' -60.5 NC_002512.2 + 90123 0.72 0.535418
Target:  5'- gCGGG-CGCC-CGGUGCGCgaGGGCCGc -3'
miRNA:   3'- -GCCUgGCGGuGCUACGCGagCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 112072 0.71 0.553994
Target:  5'- uCGGuCCGCCGCGAgcccGuCGCcuggCGGACCc -3'
miRNA:   3'- -GCCuGGCGGUGCUa---C-GCGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 225503 0.71 0.572757
Target:  5'- gGGGCCGCCGCGGgggucccGgGCUucgCGGACgGg -3'
miRNA:   3'- gCCUGGCGGUGCUa------CgCGA---GCCUGgC- -5'
9205 3' -60.5 NC_002512.2 + 221441 0.71 0.572757
Target:  5'- gCGGACCGCgGcCGggGCGCggUCGuccGACCGg -3'
miRNA:   3'- -GCCUGGCGgU-GCuaCGCG--AGC---CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.