miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 18119 0.71 0.582195
Target:  5'- cCGGGCCuCCACGuccucccgcaGCGCcCGGGCCGc -3'
miRNA:   3'- -GCCUGGcGGUGCua--------CGCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 78855 0.72 0.535418
Target:  5'- aCGGGCCGCCGCcucgaGGUG-GCUCGcgucgccauggaGACCGa -3'
miRNA:   3'- -GCCUGGCGGUG-----CUACgCGAGC------------CUGGC- -5'
9205 3' -60.5 NC_002512.2 + 81042 0.73 0.455046
Target:  5'- cCGGcguuCCGgCAgCGGUGCGCcCGGACCGc -3'
miRNA:   3'- -GCCu---GGCgGU-GCUACGCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 123426 0.76 0.309891
Target:  5'- aGGucCCGCCGCccGUGCGCagUCGGACCGa -3'
miRNA:   3'- gCCu-GGCGGUGc-UACGCG--AGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 38479 0.69 0.686766
Target:  5'- cCGGGCCGCCACG--GCGCUCa----- -3'
miRNA:   3'- -GCCUGGCGGUGCuaCGCGAGccuggc -5'
9205 3' -60.5 NC_002512.2 + 72865 0.7 0.618298
Target:  5'- cCGGGCCGCgucgccguuguCGcgGgGCUCGGGCCc -3'
miRNA:   3'- -GCCUGGCGgu---------GCuaCgCGAGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 3381 0.72 0.516154
Target:  5'- aGGGCCGCCagcaggacccgcgGCGAggggaGCGCcCGGGCCc -3'
miRNA:   3'- gCCUGGCGG-------------UGCUa----CGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 85264 0.77 0.266068
Target:  5'- gCGuGGCCGCCACGuccaGCGCggcgCGGACCu -3'
miRNA:   3'- -GC-CUGGCGGUGCua--CGCGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 152306 0.7 0.610675
Target:  5'- gGGACCGCUcgGCG-UG-GCUCGGACg- -3'
miRNA:   3'- gCCUGGCGG--UGCuACgCGAGCCUGgc -5'
9205 3' -60.5 NC_002512.2 + 96299 0.78 0.254504
Target:  5'- gCGGGCCGCCGCc--GCGggCGGGCCGg -3'
miRNA:   3'- -GCCUGGCGGUGcuaCGCgaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 108423 0.72 0.517066
Target:  5'- gGGACgGCgGCGG-GCGCggggCGGACCc -3'
miRNA:   3'- gCCUGgCGgUGCUaCGCGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 41238 0.71 0.582195
Target:  5'- aCGGGCCGCCGCcgccgccgGCGCccuugCGGcCCGa -3'
miRNA:   3'- -GCCUGGCGGUGcua-----CGCGa----GCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 135237 0.73 0.484699
Target:  5'- cCGGGCCGCCucgaggccgucguccGCGccGCGCUCgacgaggccuGGGCCGc -3'
miRNA:   3'- -GCCUGGCGG---------------UGCuaCGCGAG----------CCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 131088 0.73 0.471499
Target:  5'- cCGG-CCGCCGggguaccuggacgUGGUGCGC-CGGGCCa -3'
miRNA:   3'- -GCCuGGCGGU-------------GCUACGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 89607 0.75 0.359
Target:  5'- gGGAaCGuCCGCGggGCGCUCGGgcGCCGa -3'
miRNA:   3'- gCCUgGC-GGUGCuaCGCGAGCC--UGGC- -5'
9205 3' -60.5 NC_002512.2 + 126422 0.76 0.3289
Target:  5'- cCGaGACCcgaGCCGCGuccucggacccGCGCUCGGACCGg -3'
miRNA:   3'- -GC-CUGG---CGGUGCua---------CGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 65089 0.68 0.714841
Target:  5'- aGucCCGUCGCGA-GCGCUUGGugUGc -3'
miRNA:   3'- gCcuGGCGGUGCUaCGCGAGCCugGC- -5'
9205 3' -60.5 NC_002512.2 + 50926 0.69 0.686766
Target:  5'- cCGGGCCGCCGCG--GCGU--GGAUCa -3'
miRNA:   3'- -GCCUGGCGGUGCuaCGCGagCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 108738 0.69 0.66784
Target:  5'- uGGGCCGCgGCcg-GCGuCUCGGccGCCGu -3'
miRNA:   3'- gCCUGGCGgUGcuaCGC-GAGCC--UGGC- -5'
9205 3' -60.5 NC_002512.2 + 75466 0.7 0.629741
Target:  5'- uGGacGCCGCCAUcuUGC-CUCGGACCc -3'
miRNA:   3'- gCC--UGGCGGUGcuACGcGAGCCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.