miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 30626 0.66 0.836105
Target:  5'- uCGGGCCGCCcgacauccagagacuCGAcaucgggcUGCGC-CGGAUCu -3'
miRNA:   3'- -GCCUGGCGGu--------------GCU--------ACGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 33192 0.66 0.835336
Target:  5'- uCGGGCUGgCggACGGUGcCGCUCGucCCGc -3'
miRNA:   3'- -GCCUGGCgG--UGCUAC-GCGAGCcuGGC- -5'
9205 3' -60.5 NC_002512.2 + 34904 0.67 0.794951
Target:  5'- gCGGACaGCCAUGGacguccuaUGCGCUCGauCCGc -3'
miRNA:   3'- -GCCUGgCGGUGCU--------ACGCGAGCcuGGC- -5'
9205 3' -60.5 NC_002512.2 + 36989 0.75 0.349481
Target:  5'- uGGACCGCCGCGGagcgcgacgGCGCUUauaugcguccccggGGACCa -3'
miRNA:   3'- gCCUGGCGGUGCUa--------CGCGAG--------------CCUGGc -5'
9205 3' -60.5 NC_002512.2 + 37862 0.67 0.811535
Target:  5'- aGGACCGCCGCucccGCGCccgccaGGACgGu -3'
miRNA:   3'- gCCUGGCGGUGcua-CGCGag----CCUGgC- -5'
9205 3' -60.5 NC_002512.2 + 38479 0.69 0.686766
Target:  5'- cCGGGCCGCCACG--GCGCUCa----- -3'
miRNA:   3'- -GCCUGGCGGUGCuaCGCGAGccuggc -5'
9205 3' -60.5 NC_002512.2 + 38928 0.75 0.359
Target:  5'- gGGGCCGCCGCGGcgggcgcccgcgUGCGCcCGGGuCUGg -3'
miRNA:   3'- gCCUGGCGGUGCU------------ACGCGaGCCU-GGC- -5'
9205 3' -60.5 NC_002512.2 + 39601 0.68 0.742364
Target:  5'- uCGGACU----CGGUGUGCUCGGAgCCGa -3'
miRNA:   3'- -GCCUGGcgguGCUACGCGAGCCU-GGC- -5'
9205 3' -60.5 NC_002512.2 + 40264 0.67 0.794951
Target:  5'- -cGACCGCgACGAUcGCGUgCGG-CCGc -3'
miRNA:   3'- gcCUGGCGgUGCUA-CGCGaGCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 41238 0.71 0.582195
Target:  5'- aCGGGCCGCCGCcgccgccgGCGCccuugCGGcCCGa -3'
miRNA:   3'- -GCCUGGCGGUGcua-----CGCGa----GCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 42571 0.68 0.724086
Target:  5'- aCGGGCgggCGCCGCGAggcgaGCgGCggggCGGACCc -3'
miRNA:   3'- -GCCUG---GCGGUGCUa----CG-CGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 45215 0.68 0.76385
Target:  5'- gCGGACgGCCgccgaccggauuucgGCGcgGCGCccgCGGACUc -3'
miRNA:   3'- -GCCUGgCGG---------------UGCuaCGCGa--GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 45263 0.69 0.66784
Target:  5'- uCGG-CCGCCgGCGggGCGCUCGcGCuCGu -3'
miRNA:   3'- -GCCuGGCGG-UGCuaCGCGAGCcUG-GC- -5'
9205 3' -60.5 NC_002512.2 + 45304 0.67 0.777855
Target:  5'- aCGGACCGCCGCccUGCcggcccGCgggucggaGGGCCGu -3'
miRNA:   3'- -GCCUGGCGGUGcuACG------CGag------CCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 47373 0.66 0.819619
Target:  5'- cCGGA-CGCUGCGgcGCGCggaGGACaCGg -3'
miRNA:   3'- -GCCUgGCGGUGCuaCGCGag-CCUG-GC- -5'
9205 3' -60.5 NC_002512.2 + 49657 0.73 0.481161
Target:  5'- uCGGACC-CCACGuacgGgGCgCGGGCCGg -3'
miRNA:   3'- -GCCUGGcGGUGCua--CgCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 50926 0.69 0.686766
Target:  5'- cCGGGCCGCCGCG--GCGU--GGAUCa -3'
miRNA:   3'- -GCCUGGCGGUGCuaCGCGagCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 51192 0.68 0.760307
Target:  5'- aCGcGGCgGCCGCGcUGCGggcCUCGGACg- -3'
miRNA:   3'- -GC-CUGgCGGUGCuACGC---GAGCCUGgc -5'
9205 3' -60.5 NC_002512.2 + 57004 0.66 0.835336
Target:  5'- uGGGCgGCCGgGucgGCGgUCuGACCGg -3'
miRNA:   3'- gCCUGgCGGUgCua-CGCgAGcCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 60742 0.66 0.836105
Target:  5'- cCGcGACCGCgGCGGccgggcggacgaggaGCGCgacgacCGGACCGa -3'
miRNA:   3'- -GC-CUGGCGgUGCUa--------------CGCGa-----GCCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.