miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 18572 1.08 0.002686
Target:  5'- cCGGACCGCCACGAUGCGCUCGGACCGc -3'
miRNA:   3'- -GCCUGGCGGUGCUACGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 3381 0.72 0.516154
Target:  5'- aGGGCCGCCagcaggacccgcgGCGAggggaGCGCcCGGGCCc -3'
miRNA:   3'- gCCUGGCGG-------------UGCUa----CGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 78855 0.72 0.535418
Target:  5'- aCGGGCCGCCGCcucgaGGUG-GCUCGcgucgccauggaGACCGa -3'
miRNA:   3'- -GCCUGGCGGUG-----CUACgCGAGC------------CUGGC- -5'
9205 3' -60.5 NC_002512.2 + 10771 0.66 0.857693
Target:  5'- uCGGccCCGCCGCGGUagGCGUaguagCGG-CCGa -3'
miRNA:   3'- -GCCu-GGCGGUGCUA--CGCGa----GCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 126422 0.76 0.3289
Target:  5'- cCGaGACCcgaGCCGCGuccucggacccGCGCUCGGACCGg -3'
miRNA:   3'- -GC-CUGG---CGGUGCua---------CGCGAGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 36989 0.75 0.349481
Target:  5'- uGGACCGCCGCGGagcgcgacgGCGCUUauaugcguccccggGGACCa -3'
miRNA:   3'- gCCUGGCGGUGCUa--------CGCGAG--------------CCUGGc -5'
9205 3' -60.5 NC_002512.2 + 89607 0.75 0.359
Target:  5'- gGGAaCGuCCGCGggGCGCUCGGgcGCCGa -3'
miRNA:   3'- gCCUgGC-GGUGCuaCGCGAGCC--UGGC- -5'
9205 3' -60.5 NC_002512.2 + 87335 0.75 0.381651
Target:  5'- uGGACCGauCCGCGGUGCGCggucgaCGGGgCGa -3'
miRNA:   3'- gCCUGGC--GGUGCUACGCGa-----GCCUgGC- -5'
9205 3' -60.5 NC_002512.2 + 131088 0.73 0.471499
Target:  5'- cCGG-CCGCCGggguaccuggacgUGGUGCGC-CGGGCCa -3'
miRNA:   3'- -GCCuGGCGGU-------------GCUACGCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 136424 0.72 0.507983
Target:  5'- aGGucuCCGCCACGAUcccgGCGCUCGaGcGCUGg -3'
miRNA:   3'- gCCu--GGCGGUGCUA----CGCGAGC-C-UGGC- -5'
9205 3' -60.5 NC_002512.2 + 49657 0.73 0.481161
Target:  5'- uCGGACC-CCACGuacgGgGCgCGGGCCGg -3'
miRNA:   3'- -GCCUGGcGGUGCua--CgCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 81042 0.73 0.455046
Target:  5'- cCGGcguuCCGgCAgCGGUGCGCcCGGACCGc -3'
miRNA:   3'- -GCCu---GGCgGU-GCUACGCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 96299 0.78 0.254504
Target:  5'- gCGGGCCGCCGCc--GCGggCGGGCCGg -3'
miRNA:   3'- -GCCUGGCGGUGcuaCGCgaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 135237 0.73 0.484699
Target:  5'- cCGGGCCGCCucgaggccgucguccGCGccGCGCUCgacgaggccuGGGCCGc -3'
miRNA:   3'- -GCCUGGCGG---------------UGCuaCGCGAG----------CCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 85264 0.77 0.266068
Target:  5'- gCGuGGCCGCCACGuccaGCGCggcgCGGACCu -3'
miRNA:   3'- -GC-CUGGCGGUGCua--CGCGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 97147 0.74 0.405235
Target:  5'- gGGACgaCGCCGCGcUGCGCcugcggcagCGGGCCGa -3'
miRNA:   3'- gCCUG--GCGGUGCuACGCGa--------GCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 103110 0.72 0.505272
Target:  5'- gCGGcacgcgucgccgccGCCGCCGCGccccgagGCGuCUCGGGCCa -3'
miRNA:   3'- -GCC--------------UGGCGGUGCua-----CGC-GAGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 108423 0.72 0.517066
Target:  5'- gGGACgGCgGCGG-GCGCggggCGGACCc -3'
miRNA:   3'- gCCUGgCGgUGCUaCGCGa---GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 123426 0.76 0.309891
Target:  5'- aGGucCCGCCGCccGUGCGCagUCGGACCGa -3'
miRNA:   3'- gCCu-GGCGGUGc-UACGCG--AGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 38928 0.75 0.359
Target:  5'- gGGGCCGCCGCGGcgggcgcccgcgUGCGCcCGGGuCUGg -3'
miRNA:   3'- gCCUGGCGGUGCU------------ACGCGaGCCU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.