miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 226646 0.68 0.760307
Target:  5'- gCGGACCGUCGucaccCGAcGCGC-CGGGuCCa -3'
miRNA:   3'- -GCCUGGCGGU-----GCUaCGCGaGCCU-GGc -5'
9205 3' -60.5 NC_002512.2 + 226514 0.67 0.769134
Target:  5'- uGGGCC-CCGCGGaGCGggCGGACgGu -3'
miRNA:   3'- gCCUGGcGGUGCUaCGCgaGCCUGgC- -5'
9205 3' -60.5 NC_002512.2 + 226407 0.66 0.857693
Target:  5'- gGGAcCCGUCGCGuccGCGuCUCcGGACgCGg -3'
miRNA:   3'- gCCU-GGCGGUGCua-CGC-GAG-CCUG-GC- -5'
9205 3' -60.5 NC_002512.2 + 225503 0.71 0.572757
Target:  5'- gGGGCCGCCGCGGgggucccGgGCUucgCGGACgGg -3'
miRNA:   3'- gCCUGGCGGUGCUa------CgCGA---GCCUGgC- -5'
9205 3' -60.5 NC_002512.2 + 224933 0.69 0.705534
Target:  5'- gGGACCGgguCCGugcCGGUGuCGCUCGGcuccGCCGu -3'
miRNA:   3'- gCCUGGC---GGU---GCUAC-GCGAGCC----UGGC- -5'
9205 3' -60.5 NC_002512.2 + 223192 0.69 0.696173
Target:  5'- aCGGGCCGCCcgACGGggacgGCGUccCGGAgCGc -3'
miRNA:   3'- -GCCUGGCGG--UGCUa----CGCGa-GCCUgGC- -5'
9205 3' -60.5 NC_002512.2 + 222637 0.72 0.525294
Target:  5'- aCGGAcgccgcuCCGCCGCGAcgGCcgGC-CGGGCCGa -3'
miRNA:   3'- -GCCU-------GGCGGUGCUa-CG--CGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 222530 0.73 0.463668
Target:  5'- gCGGccGCCGUCGCGGUGgGC-CGGGCUa -3'
miRNA:   3'- -GCC--UGGCGGUGCUACgCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 222423 0.67 0.777855
Target:  5'- gGGGCCggcaGCCGCGccGCGgCUuccccCGGGCCGc -3'
miRNA:   3'- gCCUGG----CGGUGCuaCGC-GA-----GCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 221831 0.66 0.827555
Target:  5'- uCGGcguCCGacCCGCGGggGCGcCUCGGgACCGg -3'
miRNA:   3'- -GCCu--GGC--GGUGCUa-CGC-GAGCC-UGGC- -5'
9205 3' -60.5 NC_002512.2 + 221687 0.66 0.842957
Target:  5'- gCGGAcacCCGCC-CGgcGaCGCUCGG-CCu -3'
miRNA:   3'- -GCCU---GGCGGuGCuaC-GCGAGCCuGGc -5'
9205 3' -60.5 NC_002512.2 + 221489 0.66 0.826768
Target:  5'- gGGACaauaauaucccggCGaCCACaaAUGCGCUCGcGACCGc -3'
miRNA:   3'- gCCUG-------------GC-GGUGc-UACGCGAGC-CUGGC- -5'
9205 3' -60.5 NC_002512.2 + 221441 0.71 0.572757
Target:  5'- gCGGACCGCgGcCGggGCGCggUCGuccGACCGg -3'
miRNA:   3'- -GCCUGGCGgU-GCuaCGCG--AGC---CUGGC- -5'
9205 3' -60.5 NC_002512.2 + 220367 0.75 0.351662
Target:  5'- cCGuGGCCGCCGcCGccGUGCUgGGGCCGg -3'
miRNA:   3'- -GC-CUGGCGGU-GCuaCGCGAgCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 220120 0.69 0.677319
Target:  5'- uGaGCCGCCACGcgGgGCggCGGGuCCGg -3'
miRNA:   3'- gCcUGGCGGUGCuaCgCGa-GCCU-GGC- -5'
9205 3' -60.5 NC_002512.2 + 219678 0.67 0.766497
Target:  5'- uGGGCgCGCCGCccgaggacgaggagGAgcgucgGCGCUCGGGgCGc -3'
miRNA:   3'- gCCUG-GCGGUG--------------CUa-----CGCGAGCCUgGC- -5'
9205 3' -60.5 NC_002512.2 + 219405 0.66 0.819619
Target:  5'- uCGGcCCGCCGCGAcGCccacGCcCGGGgCGg -3'
miRNA:   3'- -GCCuGGCGGUGCUaCG----CGaGCCUgGC- -5'
9205 3' -60.5 NC_002512.2 + 219218 0.67 0.777855
Target:  5'- cCGGGCCgGCCucgGCGAggucgggaucGUGCUCGG-CCGc -3'
miRNA:   3'- -GCCUGG-CGG---UGCUa---------CGCGAGCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 217591 0.66 0.835336
Target:  5'- gCGGcGCCGCCuCGGgggucgucgGCGaCUCGGGCgGc -3'
miRNA:   3'- -GCC-UGGCGGuGCUa--------CGC-GAGCCUGgC- -5'
9205 3' -60.5 NC_002512.2 + 216040 0.67 0.803311
Target:  5'- aGGGCgCGCgaguGCGAcggGCGUUCGgGGCCGg -3'
miRNA:   3'- gCCUG-GCGg---UGCUa--CGCGAGC-CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.